| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,160,633 – 16,160,734 |
| Length | 101 |
| Max. P | 0.553004 |
| Location | 16,160,633 – 16,160,734 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.70 |
| Mean single sequence MFE | -18.38 |
| Consensus MFE | -11.93 |
| Energy contribution | -12.37 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16160633 101 + 27905053 AAUAACAACAAUCUGCUACUGAUU-----ACUGAUCACUUAAACAGAU-UAUGUUUCGAAGUGAUACAAAUUCGAAGACCAA-------------AGGUCUUAAGCCUUGCCUUAUCACA ...((((..((((((....(((((-----...)))))......)))))-).)))).....(((((((((.....((((((..-------------.)))))).....)))...)))))). ( -19.10) >DroSec_CAF1 30206 100 + 1 AAUAAUAACAAUCUGCUACU-AUU-----ACUGAUCACUUAAACAGAU-UAUGUUUCGAAGUGAUACAAAUUCGCAGUCCAA-------------AGGUCUUAAGCCUUGCCUUAUCACA ............((((....-(((-----....((((((((((((...-..)))))..)))))))...)))..))))....(-------------((((.....)))))........... ( -16.80) >DroSim_CAF1 32377 95 + 1 AAUAAUAUCAAUCAGCUACU-AUU-----ACUGAUCACUUAAACAGAU-UAUGUUUCGAAGUGAUACAAAUUCGCAGACCAA-------------AGGUCUUAAGCC-----UUAUCACA ..............(((...-...-----..((((((((((((((...-..)))))..))))))).)).......(((((..-------------.)))))..))).-----........ ( -16.30) >DroYak_CAF1 26561 119 + 1 AAUAGUAAUAAUCUGCAAUAAAUUAUGAAACGGAUCACCUAAGCAGAUUUAUGUUGCGGAGUGAUACAAGUUCCAAGACUAAUCAAAAUAGAUUUAGGUC-UAAGCCUUGCCCUAACACA ...........(((((((((.....((....((....))....))......)))))))))(((.((((((.....(((((((((......))))..))))-)....))))...)).))). ( -21.30) >consensus AAUAAUAACAAUCUGCUACU_AUU_____ACUGAUCACUUAAACAGAU_UAUGUUUCGAAGUGAUACAAAUUCGAAGACCAA_____________AGGUCUUAAGCCUUGCCUUAUCACA ..............(((................(((((((.((((......))))...)))))))..........(((((................)))))..))).............. (-11.93 = -12.37 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:24 2006