Locus 6167

Sequence ID 3R_DroMel_CAF1
Location 16,158,823 – 16,158,935
Length 112
Max. P 0.548784
window10052

overview

Window 2

Location 16,158,823 – 16,158,935
Length 112
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 86.63
Mean single sequence MFE -36.62
Consensus MFE -28.66
Energy contribution -29.97
Covariance contribution 1.31
Combinations/Pair 1.10
Mean z-score -2.04
Structure conservation index 0.78
SVM decision value 0.03
SVM RNA-class probability 0.548784
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16158823 112 + 27905053
CCAAAUUGGCGGUUUUCGUGGCUCGAAAUGAGCUGCGGUGGGGCUGGCAUGUAUAAAAUAAAUUUCCGCUGCGGUCCCCACAAUC-CGCCAAUUGAUGCACAUA---GAUGUAGAU
...(((((((((....((..((((.....))))..))((((((.(.(((.((..(((.....)))..))))).).))))))...)-))))))))..((((....---..))))... ( -42.60)
>DroSec_CAF1 28405 112 + 1
CCAAAUUGGCGGUUUUCGUGGCUCCAAAUGAGCUGCGGUGGGGCUGGCAUGUAUAAAAUAAAUUUCCGCUGCGGUCCCCACAAUC-CGCCAAUUGAUGUACACA---GAUGUAGAU
...(((((((((....((..((((.....))))..))((((((.(.(((.((..(((.....)))..))))).).))))))...)-)))))))).((.((((..---..)))).)) ( -42.90)
>DroSim_CAF1 30552 112 + 1
CCAAAUUGGCGGUUUUCGUGGCUCCAAAUGAGCUGCGGUGGGGCUGGCAUGUAUAAAAUAAAUUUCCGCUGCGGUCCCCACAAUC-CGCCAAUUGAUGUACACA---GAUGUAGAU
...(((((((((....((..((((.....))))..))((((((.(.(((.((..(((.....)))..))))).).))))))...)-)))))))).((.((((..---..)))).)) ( -42.90)
>DroEre_CAF1 28305 102 + 1
CCAAAUUGGCGGUUUUCGUGGCUCCAAAUGAGCUGCGGUGGGGCUGGCAUGUAUAAAAUAAAUUUCCGCUGCGGUCCCGACAAUC-CCCCAAUUGAU-------------GUAGAU
...((((((.((..((((..((((.....))))..))(((((((((.((.((..(((.....)))..))))))))))).))))..-))))))))...-------------...... ( -32.10)
>DroYak_CAF1 24718 102 + 1
CCAAAUUGGCGGUUUUCGUGGCUCCAAAUGAGCUGCGGUGGGCCUGGCAUUUAUAAAAUAUAUUUCCGUUGCGGUCCCGACAAUC-CCCCAAUUGAU-------------GUGGAU
(((((((((.((..((((..((((.....))))..))(.(((((..(((....................)))))))))...))..-))))))))...-------------.))).. ( -29.05)
>DroAna_CAF1 24628 115 + 1
CCAAAUUGGCGGUUUUCGUGGCGCCAAAUGAGCUGCGGUGUGGCUGGCAUGUAUGAAAUAAAUUUUAGCUGCGGUCCCUGCAUCCUCGGCAA-UAAUACAAACAAUUGAUGUCAAU
.....((((((.(......).))))))..(((.(((((.(.(((((.((.((.(((((....))))))))))))))))))))..)))((((.-((((.......)))).))))... ( -30.20)
>consensus
CCAAAUUGGCGGUUUUCGUGGCUCCAAAUGAGCUGCGGUGGGGCUGGCAUGUAUAAAAUAAAUUUCCGCUGCGGUCCCCACAAUC_CGCCAAUUGAUG_ACACA___GAUGUAGAU
...((((((((.....((..((((.....))))..))((((((.(.(((.((..(((.....)))..))))).).)))))).....))))))))...................... (-28.66 = -29.97 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:23 2006