Locus 6165

Sequence ID 3R_DroMel_CAF1
Location 16,156,440 – 16,156,542
Length 102
Max. P 0.919148
window10047

overview

Window 7

Location 16,156,440 – 16,156,542
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 95.69
Mean single sequence MFE -28.74
Consensus MFE -26.20
Energy contribution -26.04
Covariance contribution -0.16
Combinations/Pair 1.09
Mean z-score -1.45
Structure conservation index 0.91
SVM decision value 1.13
SVM RNA-class probability 0.919148
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16156440 102 + 27905053
GCUGCAGAUGCAUUAGGAAAUCAAAUGCAGCCACGGAAAUAUUGAUAGCCACGCAAUUUGUUGCAGUUUCAGCUGCCACUGCUGUUGCCAUUGGAAUUGCAC
((((((..((.(((....)))))..))))))...((..((....))..))..(((((((((.(((((....))))).)).((....)).....))))))).. ( -26.40)
>DroSec_CAF1 26436 102 + 1
GCUGCAGAUGCAUUAGGAAAUCAAAUGCAGCCACGGAAAUAUUGAUAGCCACGCAAUUUGUUGCAGUUCCAGCUGCCACUGCUGCUGCCACUGGAAUUGCAC
((((((..((.(((....)))))..))))))...((..((....))..))..(((((((((.(((((..(((......)))..))))).))..))))))).. ( -29.20)
>DroSim_CAF1 27942 102 + 1
GCUGCAGAUGCAUUAGGAAAUCAAAUGCAGCCACGGAAAUAUUGAUAGCCACACAAUUUGUUGCAGUUCCAGCUGCCACUGCUGCUGCCACUGGAAUUGCAC
((((((..((.(((....)))))..))))))...((..((....))..))...........(((((((((((..((..(....)..))..))))))))))). ( -28.70)
>DroEre_CAF1 26225 102 + 1
GCUGCAGAUGCAUUAGGAAAUCAAAUGCAGCCACGGAAAUAUUGAUAGCCACGCAAUUUGUUGCAGUUCAAGCUGCUACAGCUGCUGCCACUGAAAUUGCAC
((((((..((.(((....)))))..))))))...((..((....))..))..(((((((((.(((((...(((((...)))))))))).))..))))))).. ( -29.70)
>DroYak_CAF1 22148 101 + 1
GCUGCAGAUGCAUUAGGAAAUCAAAUGCAGCUACGGAAAUAUUGAUAGCCA-GCAAUUUGUUGCAGUUCCAGCUGCUACUGCUGCUGCCACUGAAAUUGCAC
((((((..((.(((....)))))..))))))...((..((....))..)).-(((((((....((((..((((.((....)).))))..))))))))))).. ( -29.70)
>consensus
GCUGCAGAUGCAUUAGGAAAUCAAAUGCAGCCACGGAAAUAUUGAUAGCCACGCAAUUUGUUGCAGUUCCAGCUGCCACUGCUGCUGCCACUGGAAUUGCAC
((((((..((.(((....)))))..))))))...((..((....))..))..(((((((....((((..((((.((....)).))))..))))))))))).. (-26.20 = -26.04 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:18 2006