| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,156,184 – 16,156,275 |
| Length | 91 |
| Max. P | 0.999364 |
| Location | 16,156,184 – 16,156,275 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 98.68 |
| Mean single sequence MFE | -26.02 |
| Consensus MFE | -24.94 |
| Energy contribution | -24.94 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.96 |
| SVM decision value | 3.54 |
| SVM RNA-class probability | 0.999364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16156184 91 + 27905053 UCCUGCAGAAGCACACACGCACAAAGCGAAAGAGACACACACGGUAGACCGGUAAUGAAGCUUCUGCGGUGAAUUGGCCAAUAGAAAAUAC ((((((((((((.....(((.....)))..........((.(((....)))))......)))))))))).))................... ( -26.90) >DroSec_CAF1 26180 91 + 1 UCCUGCAGAAGCACACACGCACAAAGCGAAAGAGACACACACGGUAGCCCGGUAAUGAAGCUUCUGCGGUUAAUUGGCCAAUAGAAAAUAC ....((((((((.....(((.....)))..........((.(((....)))))......))))))))((((....))))............ ( -25.20) >DroSim_CAF1 27686 91 + 1 UCCUGCAGAAGCACACACGCACAAAGCGAAAGAGACACACACGGUAGCCCGGUAAUGAAGCUUCUGCGGUGAAUUGGCCAAUAGAAAAUAC ((((((((((((.....(((.....)))..........((.(((....)))))......)))))))))).))................... ( -26.00) >DroEre_CAF1 25971 91 + 1 UCCUGCAGAAGCACACACGCACAAAGCGAAAGAGACACACACGGUGGCCCGGUAAUGAAGCUUCUGCGGUGAAUUGGCCAAUAGAAAAUAC ((((((((((((.....(((.....)))..........((.(((....)))))......)))))))))).))................... ( -26.00) >DroYak_CAF1 21893 91 + 1 UCCUGCAGAAGCACACACGCACAAAGCGAAAGAGACACACACGGUAGCCCGGUAAUGAAGCUUCUGCGGUGAAUUGGCCAAUAGAAAAUAC ((((((((((((.....(((.....)))..........((.(((....)))))......)))))))))).))................... ( -26.00) >consensus UCCUGCAGAAGCACACACGCACAAAGCGAAAGAGACACACACGGUAGCCCGGUAAUGAAGCUUCUGCGGUGAAUUGGCCAAUAGAAAAUAC ....((((((((.....(((.....)))..........((.(((....)))))......))))))))(((......)))............ (-24.94 = -24.94 + -0.00)
| Location | 16,156,184 – 16,156,275 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 98.68 |
| Mean single sequence MFE | -25.70 |
| Consensus MFE | -25.70 |
| Energy contribution | -25.70 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.16 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591788 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16156184 91 - 27905053 GUAUUUUCUAUUGGCCAAUUCACCGCAGAAGCUUCAUUACCGGUCUACCGUGUGUGUCUCUUUCGCUUUGUGCGUGUGUGCUUCUGCAGGA ......................((((((((((..(((((((((....))).))).........(((.....))).))).)))))))).)). ( -25.30) >DroSec_CAF1 26180 91 - 1 GUAUUUUCUAUUGGCCAAUUAACCGCAGAAGCUUCAUUACCGGGCUACCGUGUGUGUCUCUUUCGCUUUGUGCGUGUGUGCUUCUGCAGGA ......................((((((((((..(((((((((....))).))).........(((.....))).))).)))))))).)). ( -25.80) >DroSim_CAF1 27686 91 - 1 GUAUUUUCUAUUGGCCAAUUCACCGCAGAAGCUUCAUUACCGGGCUACCGUGUGUGUCUCUUUCGCUUUGUGCGUGUGUGCUUCUGCAGGA ......................((((((((((..(((((((((....))).))).........(((.....))).))).)))))))).)). ( -25.80) >DroEre_CAF1 25971 91 - 1 GUAUUUUCUAUUGGCCAAUUCACCGCAGAAGCUUCAUUACCGGGCCACCGUGUGUGUCUCUUUCGCUUUGUGCGUGUGUGCUUCUGCAGGA ......................((((((((((..(((((((((....))).))).........(((.....))).))).)))))))).)). ( -25.80) >DroYak_CAF1 21893 91 - 1 GUAUUUUCUAUUGGCCAAUUCACCGCAGAAGCUUCAUUACCGGGCUACCGUGUGUGUCUCUUUCGCUUUGUGCGUGUGUGCUUCUGCAGGA ......................((((((((((..(((((((((....))).))).........(((.....))).))).)))))))).)). ( -25.80) >consensus GUAUUUUCUAUUGGCCAAUUCACCGCAGAAGCUUCAUUACCGGGCUACCGUGUGUGUCUCUUUCGCUUUGUGCGUGUGUGCUUCUGCAGGA ......................((((((((((..(((((((((....))).))).........(((.....))).))).)))))))).)). (-25.70 = -25.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:17 2006