| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,146,197 – 16,146,303 |
| Length | 106 |
| Max. P | 0.610299 |
| Location | 16,146,197 – 16,146,303 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 78.71 |
| Mean single sequence MFE | -51.02 |
| Consensus MFE | -23.91 |
| Energy contribution | -25.17 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.610299 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16146197 106 - 27905053 CAGUUGCUAACAGCACUGGUGUAGAGCUGCUGCAGCAGUGGAGUGGGUGUCCGC---GGGGCGGACAGGCUGGUGUCGGAGCGCGAGGUGUCCACC---UCGGCCGAUGGCA ((((((((.((..(((((.(((((.....))))).)))))..)).)))((((((---...)))))).))))).(((((..((.((((((....)))---)))))...))))) ( -47.70) >DroVir_CAF1 28462 100 - 1 CAGUUACUCACGGCGCUGCUAUAUAGCUGCUGCAGUAGCGGCGUCUGGGCGCGC---GA---CGACUGGCUGUUGUCGGAGCGGGAGUUCUCCUGC---UCGGCC---GGCG ..(((...((.(((((((((((...((....)).)))))))))))))(((...(---((---((((.....)))))))((((((((....))))))---)).)))---))). ( -50.20) >DroPse_CAF1 22472 100 - 1 CAGUUGCUGACGGCGCUGCUGUAGAGCUGCUGCAGCAGUGGAGUCUGGGCCCGC---GA---GGGCAGGCUGGUGUCGGAGCGCGAGGACUCCAUG---UCGGGC---GGCA ..((((((..((((((((((((((.....))))))))))((((((...((((..---..---))))...((.((((....)))).))))))))..)---))))))---))). ( -55.20) >DroYak_CAF1 12245 106 - 1 CAGUUGCUAACGGCACUGCUGUAGAGCUGCUGCAGCAGUGGAGUGGGUGUCCGC---GGGGCGGACAGGCUGGUGUCGGAUCGCGAAGUGUCCAGC---UCGGCCGAUGGCA ....(((((.((((((((((((((.....)))))))))).(((((((..(.(((---((..(.((((......)))).).)))))..)..)))).)---)).)))).))))) ( -51.10) >DroAna_CAF1 12039 112 - 1 CAGUUGCUCACGGCGCUGCUGUAUAGCUGCUGAAGCAACGGAGUCGCAGCCCGACCAGACGCCGACAGACUGGUGUCGGAGCGCGAGGUGUCCACCGCAUCAGCUGGCGGCA ..(((((...((((((((..((...(((((.((..(....)..)))))))...))))).))))).(((.((((((.(((.((((...))))...))))))))))))))))). ( -46.70) >DroPer_CAF1 22671 100 - 1 CAGUUGCUGACGGCGCUGCUGUAGAGCUGCUGCAGCAGUGGAGUCUGGGCCCGC---GA---GGGCAGGCUGGUGUCGGAGCGCGAGGACUCCAUG---UCGGGC---GGCA ..((((((..((((((((((((((.....))))))))))((((((...((((..---..---))))...((.((((....)))).))))))))..)---))))))---))). ( -55.20) >consensus CAGUUGCUAACGGCGCUGCUGUAGAGCUGCUGCAGCAGUGGAGUCGGGGCCCGC___GA___GGACAGGCUGGUGUCGGAGCGCGAGGUCUCCACC___UCGGCC___GGCA (((((....((..(((((((((((.....)))))))))))..))....((((..........)))).))))).....((((........)))).........(((...))). (-23.91 = -25.17 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:11 2006