Locus 6160

Sequence ID 3R_DroMel_CAF1
Location 16,145,904 – 16,146,009
Length 105
Max. P 0.975634
window10039

overview

Window 9

Location 16,145,904 – 16,146,009
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 77.18
Mean single sequence MFE -37.70
Consensus MFE -30.05
Energy contribution -28.92
Covariance contribution -1.13
Combinations/Pair 1.33
Mean z-score -2.20
Structure conservation index 0.80
SVM decision value 1.75
SVM RNA-class probability 0.975634
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16145904 105 - 27905053
CAGCACUUGCCGGCCGCCUGACUGGGAGCUCGAAAGAUCAGGUAAGCGGUUGGCAACGGCUGGACCACGGCACCUUAACGAAAUAAAUAUAAUUAGUAAUUGCCU
((((..(((((((((((.((.((((....((....)))))).)).)))))))))))..))))......((((.....((................))...)))). ( -35.29)
>DroPse_CAF1 22179 105 - 1
CAGCAUUUACCAGCCGCCUGGCUGGGCGCUCGAAAGAUCAGGUAGGCGGUUGGUAAUGGCUGGACAACGGCGCCUGCAAGAACAAUUAGAGUUUAGAGGUCGCAU
((((..((((((((((((((.((((....((....)))))).))))))))))))))..)))).......((((((....((((.......))))..))).))).. ( -47.70)
>DroEre_CAF1 15648 103 - 1
CAGCAUUUGCCGGCCGCCUGGCUGGGAGCUCGGAAGAUCAGGUAAGCGGUUGGCAACGGCUGGACCACGGCACCUUAAAGAAGCACG--AAAUUAGUAAUAGCCU
((((..(((((((((((.((.((((....((....)))))).)).)))))))))))..))))......(((..(((....))).((.--......))....))). ( -37.60)
>DroYak_CAF1 11958 99 - 1
CAGCAUUUGCCGGCCGCCUGACUGGGAGCUCGAAAGAUCAGGUAAGCGGUUGGCAAGGGCUGGACAACGGCACCUUAAAGAAACACA------UAGUAAUAGCCU
((((.((((((((((((.((.((((....((....)))))).)).)))))))))))).))))......(((................------........))). ( -35.76)
>DroMoj_CAF1 28636 105 - 1
CAGCACUUGCCAGCAGCCUGGCUCGGCGCUCGAAAGAUCAAGUAGGCUGUGGGCAGUGGCUGAACCACAGCGCCUGCAAAAAAAACAGGAGAUGAGCAGUUGCCA
((((..(((((.((((((((.((.((...((....)))).)))))))))).)))))..)))).......(((.((((..................)))).))).. ( -37.47)
>DroAna_CAF1 11746 105 - 1
CAGCACUUGCCAGCCGCUUGACUGGGGGCCCGGAAGAUCAAGUAAGCCGUUGGCAACGGCUGGACCACAGCUCCUGCAAAAAUAGUGAAUAGUUAGUAUUUGUUU
..(((.((((((((.(((((.((((....)))).........))))).)))))))).(((((.....)))))..)))..(((((.(((....))).))))).... ( -32.40)
>consensus
CAGCACUUGCCAGCCGCCUGACUGGGAGCUCGAAAGAUCAGGUAAGCGGUUGGCAACGGCUGGACCACGGCACCUGAAAGAAAAACA__AAAUUAGUAAUUGCCU
..((..(((((((((((...(((.((...((....)))).)))..)))))))))))..((((.....))))..............................)).. (-30.05 = -28.92 +  -1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:10 2006