Locus 6159

Sequence ID 3R_DroMel_CAF1
Location 16,142,789 – 16,142,890
Length 101
Max. P 0.755097
window10038

overview

Window 8

Location 16,142,789 – 16,142,890
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 81.33
Mean single sequence MFE -26.69
Consensus MFE -15.42
Energy contribution -18.46
Covariance contribution 3.04
Combinations/Pair 1.04
Mean z-score -2.10
Structure conservation index 0.58
SVM decision value 0.49
SVM RNA-class probability 0.755097
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16142789 101 + 27905053
AUCAACUCUGCACACCUGGCCUUUUUUUUGAGGAUCCUUUUCUCUUUAAGGCCCCCAAAAUUUUCAACAGGUGUCAAGGAAUUGCUACUUAUGGUUGGCCA
..(((.(((..(((((((.......(((((.((..((((........))))..))))))).......)))))))...))).))).......(((....))) ( -25.84)
>DroSec_CAF1 12929 99 + 1
AUCAACUCUGCACACCUGGCCU--UUUUUGGGGAUCCUUUUCACUUCAAGGCCCUCAAAAUAUUCAACAGGUGUCAAGGGAUUGCUACCUAUGGUGGGCCC
..(((((((..(((((((....--.((((((((..((((........)))).)))))))).......)))))))..)))).)))(((((...))))).... ( -31.00)
>DroSim_CAF1 13277 98 + 1
AUCAACUCUGCACACCUGGC-U--UUUUUGGGGAUCCUUUUCACUUCAAGGCCCUCAAAAUAUUCAACAGGUGUCUAGGGAUUGCUACCUAUGGUGGGCCC
..((((((((.(((((((..-.--.((((((((..((((........)))).)))))))).......))))))).))))).)))(((((...))))).... ( -32.60)
>DroEre_CAF1 12425 90 + 1
AUCAGCUCUGCACACCUGGCCG---UAUGGGGGAUCCUUUUCUUUUCAUGACCCCCA-AAUAUUCAACAGGUUGUA-GGCAUUUCUAGCUAUGCU------
....((.(((((.(((((...(---((((((((.((.............))))))))-..)))....)))))))))-)))...............------ ( -26.02)
>DroYak_CAF1 8761 97 + 1
AUCAACUCUGCACACCUGGCCG---UAUUGGUGAUCCUUUUCUUUUCAUGGCCCCCA-GAUAUUCAACAGGUUUUAAGGGUUUUCUAACUGUGGUCGGCCU
...((((((....(((((...(---((((((.(..((............))..))))-.))))....)))))....))))))..........((....)). ( -18.00)
>consensus
AUCAACUCUGCACACCUGGCCU__UUUUUGGGGAUCCUUUUCUCUUCAAGGCCCCCAAAAUAUUCAACAGGUGUCAAGGGAUUGCUACCUAUGGUGGGCCC
.....((((..(((((((.......((((((((..((((........)))).)))))))).......)))))))..))))..................... (-15.42 = -18.46 +   3.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:09 2006