| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,141,585 – 16,141,692 |
| Length | 107 |
| Max. P | 0.718129 |
| Location | 16,141,585 – 16,141,692 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 79.79 |
| Mean single sequence MFE | -22.52 |
| Consensus MFE | -15.00 |
| Energy contribution | -15.92 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.718129 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16141585 107 + 27905053 ACCUUCGCUAAAAGUGCUCAUGACCAAACUUCCGUCCACGGACAGUUUGAGCAACAGUCCGGCGCCAUCAUCGCCAGGUGAAGUUCCA------AACAAAAA-AAAAU-UAAAUU ..(((((((....(..((..((..((((((((((....)))).))))))..))..))..)((((.......)))).))))))).....------........-.....-...... ( -28.40) >DroPse_CAF1 17588 102 + 1 ACCUUCGCUGAAAGUGCUCUUAACGAAACUGCCAUCCAACGACAGUUUGAGCAACAGUCCGGCGCCAUCAUCGCCAGGUGAAGUUCCUCC---UAA-AAAAA--AAAC------- ..(((((((((...(((((......((((((.(.......).)))))))))))....)).((((.......)))).))))))).......---...-.....--....------- ( -23.70) >DroGri_CAF1 5249 99 + 1 ACCCUCGCAAAAAGUGCUCUUAACCAAACUGCCCUCCACGGACAGUUUGAGCAACAGCCCAGCGCCAUCAUCGCCAGGUGAAGUUUUUCC---AAC-AAAU------U-U----- ......(.((((((((((......(((((((.((.....)).))))))).((....))..)))))..(((((....)))))..))))).)---...-....------.-.----- ( -21.40) >DroWil_CAF1 12855 104 + 1 ACCCUCGCUGAAAGUGCUCCUAACAAAACUGCCCUCCACAGAUAGUUUGAGCAACAGUCCGGCGCCAUCAUCGCCAGGUGAAGUUCAA------AA-UAAUAAAAAAA-AAA--- ....(((((((...(((((..(((....(((.......)))...))).)))))....)).((((.......)))).))))).......------..-...........-...--- ( -19.40) >DroAna_CAF1 8106 107 + 1 ACCCUCGCUAAAAGUCCUCAUGACCAAACUCCCCUCCACGGACAGUCUGAGCAACAGUCCGGCGCCAUCAUCGCCAGGUGAAGUGUUA------AC-AAAAA-UCAAUACAAAAU ....(((((....((.((((.(((.....(((.......)))..)))))))..)).....((((.......)))).))))).(((((.------..-.....-..)))))..... ( -18.50) >DroPer_CAF1 17701 105 + 1 ACCUUCGCUGAAAGUGCUCUUAACGAAACUGCCAUCCACCGACAGUUUGAGCAACAGUCCGGCGCCAUCAUCGCCAGGUGAAGUUCCUCCUCGUAA-AAAAA--AAAC------- ..(((((((((...(((((......((((((.(.......).)))))))))))....)).((((.......)))).))))))).............-.....--....------- ( -23.70) >consensus ACCCUCGCUAAAAGUGCUCUUAACCAAACUGCCCUCCACGGACAGUUUGAGCAACAGUCCGGCGCCAUCAUCGCCAGGUGAAGUUCCA______AA_AAAAA__AAAU_______ ....(((((.....(((((......((((((.(.......).))))))))))).......((((.......)))).))))).................................. (-15.00 = -15.92 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:08 2006