Locus 6156

Sequence ID 3R_DroMel_CAF1
Location 16,124,301 – 16,124,407
Length 106
Max. P 0.787723
window10035

overview

Window 5

Location 16,124,301 – 16,124,407
Length 106
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 83.01
Mean single sequence MFE -41.40
Consensus MFE -31.18
Energy contribution -32.27
Covariance contribution 1.09
Combinations/Pair 1.21
Mean z-score -2.18
Structure conservation index 0.75
SVM decision value 0.58
SVM RNA-class probability 0.787723
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16124301 106 - 27905053
CAAGGUGUAACCUCCUGGCGCAAAAGCGUCCAGCUGCAAGUGCUCUAGGCUGGGGGUGCCCGGUUGGUGGGAGCGCUGCAGCAACGUAUACUGAAAAGCAAGUGAU-
...((((((......((((((....))).)))((((((.(((((((.(((((((....)))))))....)))))))))))))....))))))..............- ( -45.10)
>DroSec_CAF1 74887 106 - 1
CAAGGUGUAACCUCCUGGCGCGAAGGCAUCCAGCUGCAAGUGCUCCAGGCUGGAAGUGCCCGGUUGGUGGGAGCGCUGCAGCAACGUAUACUGAAAAACAUGUAAU-
...((((((......(((.((....))..)))((((((.(((((((.((((((......))))))....)))))))))))))....))))))..............- ( -42.40)
>DroSim_CAF1 81588 106 - 1
CAAGGUGUAACCUCCUGGCGCGAAGGCGUCCAGCUGCAAGUGCUCCAGGCUGGGAGUGCCUGGUUGGUGGGAGCGCUGCAGCAACGUAUACUGAAAACCAUGUAAU-
...((((((......((((((....))).)))((((((.(((((((.(((..((....))..)))....)))))))))))))....))))))..............- ( -46.90)
>DroEre_CAF1 51727 106 - 1
CAAAGUGUAACCUCCUUGCGCAAACGCAUCCAGCUGCAAGUGCUCUAGACUGGGAGUGCCCGGUUGGUGGGAGCGCUGCAGCAACGUAUACUGGAAACCACGUAAU-
...((((((.......((((....))))....((((((.(((((((.(((((((....)))))))....)))))))))))))....))))))(....)........- ( -42.70)
>DroYak_CAF1 94918 104 - 1
CAAGGUGUAACCUCCUGGCGCAAACGCAUCCAGCUGCAGGUGCUCUAAGCUGGGAGUGCCUGGUUGGUGGGAACGCUGCAGCAACGUAUACU--AAACCAUGUAAU-
...((((((........(((....))).....((((((((..((((......))))..)))....((((....)))))))))....))))))--............- ( -34.70)
>DroMoj_CAF1 70604 104 - 1
GAAGAGGUAGCCA---GGCGCAAAUGCCUCCAGCUGCAGGUGCUCCAGACCGGUCGAGCCCUGCUGGUGCGGCGGCGGCAGCAGUGGAUACUAAGGAUAAUGCAAUU
.....((((.(((---.((((....(((.((.((((((((.((((..((....))))))))))).)))..)).))).)).))..))).))))............... ( -36.60)
>consensus
CAAGGUGUAACCUCCUGGCGCAAACGCAUCCAGCUGCAAGUGCUCCAGGCUGGGAGUGCCCGGUUGGUGGGAGCGCUGCAGCAACGUAUACUGAAAACCAUGUAAU_
...((((((..........((....)).....((((((.(((((((.(((((((....)))))))....)))))))))))))....))))))............... (-31.18 = -32.27 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:06 2006