Locus 6155

Sequence ID 3R_DroMel_CAF1
Location 16,121,156 – 16,121,248
Length 92
Max. P 0.821521
window10034

overview

Window 4

Location 16,121,156 – 16,121,248
Length 92
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 81.46
Mean single sequence MFE -39.51
Consensus MFE -27.53
Energy contribution -27.95
Covariance contribution 0.42
Combinations/Pair 1.20
Mean z-score -2.07
Structure conservation index 0.70
SVM decision value 0.68
SVM RNA-class probability 0.821521
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16121156 92 - 27905053
GAGGGGCACAUAUCGUGCUCCAAGGAAUCGGAGCCAUCCACCGAUACCAGGCGCUGCUUAGCGUCACCUGU------------UCCGGCCGCUCCGCUCGCCUU
..(((((((.....)))))))((((...((((((......(((..((..((((((....))))))....))------------..)))..))))))....)))) ( -36.60)
>DroSec_CAF1 71818 92 - 1
GAGGGGCACAUAUCGUGCUCCAAGGAAUCGGAGCCAUCCACCGAGACCAGGCGCUGCUUAGCGUCACCUGU------------UCCGGCUGCUCCGCCCGCCUU
..(((((((.....)))))))((((...((((((......(((.((.((((((((....))))...)))).------------)))))..))))))....)))) ( -39.50)
>DroEre_CAF1 48620 92 - 1
GAGGGGCACAUAUCGUGCUCCAAGGAAUCGGAGCCAUCCACCGAGACCAGACGCUGUUUAGCGUCACCUGU------------UGCGGCCGCGCCGCCCGCCUU
..(((((((.....)))))))..((..((((.........))))..)).((((((....))))))......------------.(((((...)))))....... ( -36.10)
>DroYak_CAF1 91790 92 - 1
GAGGGGCACAUAUCGUGCUCCAAGGAAUCGGAGCCAUCCACCGAGACCAGACGUUGCUUGGCGUCACUCGU------------UCCAGCCGCUCCGCCCGCCUU
..(((((((.....)))))))((((...((((((.......((((....((((((....)))))).)))).------------.......))))))....)))) ( -35.76)
>DroAna_CAF1 47936 92 - 1
GAGGGGCACAUGUCCUGUUCCAGGGAGUCGGAGCCAUCAACCGAUACGAGGCGCUGCUUGGCGUCACCUGC------------UCCAGCGGCUCCUUGCCCCUU
((((((((....(((((...)))))....((((((..............((((((....))))))....((------------....)))))))).)))))))) ( -41.20)
>DroPer_CAF1 86305 101 - 1
UUGGGGCACAUGUCGUGCUCCAGCGAAUCGGAGCCAUCCACCGAGGCCAGACGCGACUUGGCAUCGCCUGCGGCAGCAGCAGCUCCAGCUGCUC---CUGCCUU
.((((((((.....))))))))((((.((((.........)))).(((((.......))))).))))....(((((.((((((....)))))).---))))).. ( -47.90)
>consensus
GAGGGGCACAUAUCGUGCUCCAAGGAAUCGGAGCCAUCCACCGAGACCAGACGCUGCUUAGCGUCACCUGU____________UCCAGCCGCUCCGCCCGCCUU
..(((((((.....)))))))((((...((((((..((....)).....((((((....)))))).........................))))))....)))) (-27.53 = -27.95 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:05 2006