Locus 6154

Sequence ID 3R_DroMel_CAF1
Location 16,117,385 – 16,117,498
Length 113
Max. P 0.515549
window10033

overview

Window 3

Location 16,117,385 – 16,117,498
Length 113
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 83.65
Mean single sequence MFE -22.78
Consensus MFE -13.12
Energy contribution -13.75
Covariance contribution 0.62
Combinations/Pair 1.21
Mean z-score -2.03
Structure conservation index 0.58
SVM decision value -0.04
SVM RNA-class probability 0.515549
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16117385 113 + 27905053
AGCUUUAGCCCACAGAUAAUAUAAUCGAUAUUAAUAAAA--UGUAGGACAUUAAAGGAACUUUACUUGCUAGGAACCUAUUAAAGUUUCACAAAAGGCG-AGCGGACUUGGACGAA
.((((..(((......((((((.....))))))......--(((..(((.(((((((..(((........)))..))).)))).)))..)))...))))-)))............. ( -19.10)
>DroSec_CAF1 68063 111 + 1
AGCUUAAGCCAACAGAUAAUAUAAUCAAUAUUAAUAAAA--UGUAAGACAUUAAAGGAACUU--CUUGCUAUGAAACUAUUAAAGUUUCACAAAAGGCG-AUCGGGCUUAGACGAA
.(..((((((....(((......................--.((((((..((.....))..)--)))))..(((((((.....))))))).........-))).))))))..)... ( -20.50)
>DroSim_CAF1 74342 112 + 1
AGCUUAAGCCCACAGAUAAUAUAAUCAAUAUAAAUAAAA--UGUAGGACAUUAAAGGAACUU--CUUGGUAGGAAACUAUUAAAGUUUCACAAAAGGCGGAUCGGGCUUAGACGAA
.(..(((((((...(((......)))...........((--((.....))))...(((((((--..((((((....)))))))))))))..............)))))))..)... ( -27.30)
>DroEre_CAF1 44898 115 + 1
AGCUUAAGCCCACAGAUAAUAAAAUCAAUAUUAAUAAAACACAUCGGAGAUUAAAGAGACGCUGUUAGCUAGGAAACUUUUAACGUUUCCGAAAAAGCA-UUGGGACUUAAACGAA
.(.(((((((((..(((......))).................((((((((...((.....))(((((..((....)).))))))))))))).......-.)))).))))).)... ( -24.20)
>consensus
AGCUUAAGCCCACAGAUAAUAUAAUCAAUAUUAAUAAAA__UGUAGGACAUUAAAGGAACUU__CUUGCUAGGAAACUAUUAAAGUUUCACAAAAGGCG_AUCGGACUUAGACGAA
.(.((((((((...(((......))).............................((((((....(((.(((....))).)))))))))..............)))))))).)... (-13.12 = -13.75 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:04 2006