| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,115,362 – 16,115,470 |
| Length | 108 |
| Max. P | 0.894779 |
| Location | 16,115,362 – 16,115,470 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 86.48 |
| Mean single sequence MFE | -44.28 |
| Consensus MFE | -39.80 |
| Energy contribution | -40.17 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16115362 108 + 27905053 AGCAGCAGGUUGCGAGGCGAUGACCGUGCCCAGUGGCAAUAUCGUUUACCCGAAGACGGCGACCGGCGCGCCAUUGUCCUUCGUGGCUACGCGCUACGAUGGCAAGCU (((.((.((((((.((((((((....((((....)))).))))))))...((....)))))))).))..((((((((....((((....))))..))))))))..))) ( -43.10) >DroSec_CAF1 66078 108 + 1 AGCAGCAGCUUGCGAGGCAAUGGCCGUGCCCAGUGGCAAUAUCGUUUACCCGAAGGCGGCCACCGGCGCGCCAUUGACCUUCGUGGCCACGCGCUCCGAUGGCAAGCU ......(((((((.((((((((((.(((((..(((((..(.(((......))).)...))))).)))))))))))).)))(((..((.....))..)))..))))))) ( -50.10) >DroSim_CAF1 72331 108 + 1 AGCAGCAGCUUGCGAGGCAAUGGCUGUGCCCAGUGGCAAUAUCGUUUACCCGAAGGCGGCCACCGGCGCGCCAUUGACCUUCGUCGCCACGCGCUCCGAUGGCAAGCU ......((((((((((((((((((.(((((..(((((..(.(((......))).)...))))).)))))))))))).))))(((((..........)))))))))))) ( -49.10) >DroEre_CAF1 42803 108 + 1 AGCAACAGCUUGCGAGGCGAUUGCCGUGCCCAGCGGCAAUAUCGUUUACCCGAAAGCGGCCACCGGCACGCCAUUGACCUUCGUGGCCACCCGCUAUGAUGGCAAGCU ......(((((((..((((((((((((.....))))))))..(((((......)))))(((...))).))))......(.(((((((.....))))))).)))))))) ( -43.10) >DroYak_CAF1 86312 108 + 1 AGCUGCAGCUUGCGAGGCGAUGGCCGUGCCCAGUGGUAAUAUCGUUUACCCGAAAGCGGCCACCGGCACGCCGUUGACCUUCGUGGCCACCCGUUAUGAUGGCAAGCU ......(((((((.((((((((((.(((((..(((((..(.(((......))).)...))))).)))))))))))).)))(((((((.....)))))))..))))))) ( -47.60) >DroAna_CAF1 42765 105 + 1 ---AGCAUCUGGCGAGGCGAUGGGCAUGCCAAGUGGCAAUAUUGUUUAUCCCAAAACGGCCAGCGGAACACCAUUGACCUUUGUGGCAACACGUUAUGAUGGCAAGUU ---..((((((((((((((((((...((((....))))....(((((...((.....))......))))))))))).)))).(((....))))))).))))....... ( -32.70) >consensus AGCAGCAGCUUGCGAGGCGAUGGCCGUGCCCAGUGGCAAUAUCGUUUACCCGAAAGCGGCCACCGGCACGCCAUUGACCUUCGUGGCCACGCGCUACGAUGGCAAGCU ......(((((((.((((((((((.(((((..(((((.....(((((......)))))))))).)))))))))))).)))(((((((.....)))))))..))))))) (-39.80 = -40.17 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:59 2006