Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,112,463 – 16,112,573 |
Length | 110 |
Max. P | 0.897995 |
Location | 16,112,463 – 16,112,573 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 93.84 |
Mean single sequence MFE | -33.91 |
Consensus MFE | -29.72 |
Energy contribution | -29.76 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.49 |
Structure conservation index | 0.88 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16112463 110 - 27905053 GUUGUGUGUAGGCGUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUACCACACCACCAAUGCAGGCGC---------ACAC ..(((((((..((((......(((...(((..((..(((((.....))))).))..)))..))).......(((.....)))..............))))..))))---------))). ( -33.40) >DroSec_CAF1 63152 108 - 1 GUUGUGUGUAGGCGUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUACCA--CCACCAAUGCAGACGC---------ACAC ..(((((((..((((......(((...(((..((..(((((.....))))).))..)))..))).......(((.....)))......--......))))..))))---------))). ( -33.10) >DroSim_CAF1 69382 108 - 1 GUUGUGUGUAGGCGUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUACCA--CCACCAAUGCAGACAC---------ACAC ..(((((((..((((......(((...(((..((..(((((.....))))).))..)))..))).......(((.....)))......--......))))..))))---------))). ( -33.50) >DroEre_CAF1 39607 117 - 1 GUUGUGUGUAGGCGUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUACCA--CCACCAAUGCAGACACAAUGCACACACAC ..(((((((.((.(..((((((((...(((..((..(((((.....))))).))..)))..))).(((....)))....)))))..).--))......(((.......)))))))))). ( -36.40) >DroYak_CAF1 83342 112 - 1 GUUGUGUGUAGGCGUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUGAAACCCAUACACACGUACUAUGCGAUACCA--CCACCAAUGCAGACAC-----ACACACGC (((((((((..((((......(((........((..(((((.....))))).)).......))).......(((.....)))......--......))))..))))-----))).)).. ( -33.16) >consensus GUUGUGUGUAGGCGUAAUUGCGGGAAAUGACUGCCACGCCCAUUGUGGGCGAGCUCUUAAACCCAUACACACGUACUAUGCGAUACCA__CCACCAAUGCAGACAC_________ACAC ...(((((((.(((....)))(((...(((..((..(((((.....))))).))..)))..))).)))))))((....((((...............)))).))............... (-29.72 = -29.76 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:57 2006