| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,112,091 – 16,112,198 |
| Length | 107 |
| Max. P | 0.946691 |
| Location | 16,112,091 – 16,112,198 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 92.71 |
| Mean single sequence MFE | -36.90 |
| Consensus MFE | -32.08 |
| Energy contribution | -32.83 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946691 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16112091 107 - 27905053 AGGCUGCCACCAGCGACUUGCAAUUGUUAGGAAAAAUCCACAAGGGCGGCGUUGCAGAAGCGAGAAGAAGUCGCUCAAAGGUGGCAGACACGGUGUCUGGUACAGUU .((((((((((.(((((((((..((((..(((....)))))))..)))).))))).((.((((.......))))))...)))))(((((.....)))))...))))) ( -40.00) >DroSec_CAF1 62776 107 - 1 AGGCUGCCACCAGCGACUUGCAAUUGUUAGGAAAAAUCCACAAGGGCGGCGUUGGAGAGGCGAGAAGAAGACGCUCAAAGGUGGCAGACACGGUGUCUGGUACAGUU .(((((((.((((((.((.((..((((..(((....)))))))..))))))))))...)))(((.........)))....(((.(((((.....))))).))))))) ( -34.50) >DroSim_CAF1 69020 107 - 1 AGGCUGCCACCAGCGACUUGCAAUUGUUAGGAAAAAUCCACAAGGGCGGCGUUGCAGAGGCGAGAAGAAGACGCUCAAAGGUGGCAGACACGGUGUCUGGUACAGUU .((((((((((.(((((((((..((((..(((....)))))))..)))).))))).(((.((.........)))))...)))))(((((.....)))))...))))) ( -38.00) >DroEre_CAF1 39263 107 - 1 AUGCUGCCACCAGCGACUUGCAAUUGUUAGGAAAAAUCCACAAGGGCGGCGUUGCAGAGGCGAGAAGAAGACGCUCAAAGGUGGCAGACACGGUGUCUGGUACAGUU .((((((((((.(((((((((..((((..(((....)))))))..)))).))))).(((.((.........)))))...))))))((((.....))))))))..... ( -37.80) >DroYak_CAF1 83002 107 - 1 AGGCUGCCAACAGCGACUUGCAAUUGUUAGGAAAAAUCCACAAGGGCGGCGUAGCAGAGGCGAGAAGAAGACGCUAAAAGGUGGCAGACACUGUGUCUGGUACAGUU ..((((((....((.....))..((((..(((....))))))).))))))(((.((((((((.........))))....((((.....))))...)))).))).... ( -31.90) >DroAna_CAF1 39536 104 - 1 AGGCUGCCACAAGCGCCUUGCGAUUGUUAGGAAAAGUCCGCAGAGGCGGCGUUGCAGUGGCA---ACGAGACGCUAAAAGGUGGCAGACACCGUGUCUGGUACAGUU ....((((((.((((((..((..((((..(((....)))))))..))))))))...))))))---((.((((((.....((((.....)))))))))).))...... ( -39.20) >consensus AGGCUGCCACCAGCGACUUGCAAUUGUUAGGAAAAAUCCACAAGGGCGGCGUUGCAGAGGCGAGAAGAAGACGCUCAAAGGUGGCAGACACGGUGUCUGGUACAGUU .((((((((((.(((((((((..((((..(((....)))))))..)))).)))))...((((.........))))....)))))(((((.....)))))...))))) (-32.08 = -32.83 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:56 2006