Locus 615

Sequence ID 3R_DroMel_CAF1
Location 2,279,811 – 2,279,913
Length 102
Max. P 0.571007
window977

overview

Window 7

Location 2,279,811 – 2,279,913
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.06
Mean single sequence MFE -33.12
Consensus MFE -13.54
Energy contribution -13.65
Covariance contribution 0.11
Combinations/Pair 1.24
Mean z-score -1.99
Structure conservation index 0.41
SVM decision value 0.07
SVM RNA-class probability 0.571007
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2279811 102 - 27905053
GAGUCCAGCUGCAAUCAAUUGGUAACUGGC---CAAGACGCGGGUAGCAGCCAGGAGGC---CAGCGACGAAC------------AGAUACUGAAGAUCAAGCAGGAGAUCAUCGACUCA
(((((...((((.(((..((.((..(((((---(....(...(((....))).)..)))---)))..)).)).------------.)))..((.....)).))))((.....))))))). ( -30.30)
>DroPse_CAF1 43501 117 - 1
GAGUCGAGCUGCAAUCAAUUGGUGGCUGGGCUGCAAGAUGCAGGCAGCAGUCAAGAUGC---CAUUGAUGAACCGAAGACGGAGCAGCUAGUAAAGAUCAAGCAGGAGAUUAUAGACUCC
(((((.((((((..(((.(..(((((..((((((............)))))).....))---)))..)))).(((....))).))))))......((((........))))...))))). ( -42.20)
>DroSec_CAF1 16313 102 - 1
GAAUCCAGCUGCAAUCAAUUGGUAACUGGC---CAAGACGCGGGUAGCAGUCAGGAAGC---CAGCGACGAAC------------AGAUAAUGAAGAUCAAGCAGGAGAUCAUCGACUCA
........((((.(((..((.((..(((((---(..(((((.....)).)))..)..))---)))..)).)).------------.)))..((.....)).))))(((........))). ( -23.80)
>DroMoj_CAF1 18781 117 - 1
GAGUCGAGUUGCAAUCAACUGAGUGGCGCU---CAAGAUGCAGGCAGUAGCCAGGAAGCAGUCAUCGAAGAACACAAAACAGAGCAGUUACUAAAGAUCAAGCAGGAGAUUAUAGACUCA
(((((.(((((....))))).(((((((((---(..(((((.(((....))).(....).).))))(.....)........)))).))))))...((((........))))...))))). ( -30.00)
>DroAna_CAF1 15914 102 - 1
GAAUCCAGCUGCAAUCAAUUGGGAAAUAGC---CAGGAUGCGGGCAGCAGUCAAGAGGC---GUGCGAAGAGC------------AGCUUCUGAAGAUAAAGCAGGAGAUUAUAGACUCC
...(((.(((((.(((...(((.......)---)).)))....))))).(((.((((((---.(((.....))------------)))))))...)))......)))............. ( -29.80)
>DroPer_CAF1 43450 117 - 1
GAGUCGAGCUGCAAUCAAUUGGUGGCUGGGCUGCACGAUGCAGGCAGCAGUCAAGAUGC---CAUUGAUGAACCGAAGACGGAGCAGCUAGUAAAGAUCAAGCAGGAGAUUAUAGACUCC
(((((.((((((..(((.(..(((((..((((((.(......)...)))))).....))---)))..)))).(((....))).))))))......((((........))))...))))). ( -42.60)
>consensus
GAGUCCAGCUGCAAUCAAUUGGUAACUGGC___CAAGAUGCAGGCAGCAGUCAAGAAGC___CAGCGAAGAAC____________AGCUACUAAAGAUCAAGCAGGAGAUUAUAGACUCA
(((((..(((((.(((....................)))....)))))...............................................((((........))))...))))). (-13.54 = -13.65 +   0.11) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:29 2006