Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,279,811 – 2,279,913 |
Length | 102 |
Max. P | 0.571007 |
Location | 2,279,811 – 2,279,913 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.06 |
Mean single sequence MFE | -33.12 |
Consensus MFE | -13.54 |
Energy contribution | -13.65 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.24 |
Mean z-score | -1.99 |
Structure conservation index | 0.41 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.571007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2279811 102 - 27905053 GAGUCCAGCUGCAAUCAAUUGGUAACUGGC---CAAGACGCGGGUAGCAGCCAGGAGGC---CAGCGACGAAC------------AGAUACUGAAGAUCAAGCAGGAGAUCAUCGACUCA (((((...((((.(((..((.((..(((((---(....(...(((....))).)..)))---)))..)).)).------------.)))..((.....)).))))((.....))))))). ( -30.30) >DroPse_CAF1 43501 117 - 1 GAGUCGAGCUGCAAUCAAUUGGUGGCUGGGCUGCAAGAUGCAGGCAGCAGUCAAGAUGC---CAUUGAUGAACCGAAGACGGAGCAGCUAGUAAAGAUCAAGCAGGAGAUUAUAGACUCC (((((.((((((..(((.(..(((((..((((((............)))))).....))---)))..)))).(((....))).))))))......((((........))))...))))). ( -42.20) >DroSec_CAF1 16313 102 - 1 GAAUCCAGCUGCAAUCAAUUGGUAACUGGC---CAAGACGCGGGUAGCAGUCAGGAAGC---CAGCGACGAAC------------AGAUAAUGAAGAUCAAGCAGGAGAUCAUCGACUCA ........((((.(((..((.((..(((((---(..(((((.....)).)))..)..))---)))..)).)).------------.)))..((.....)).))))(((........))). ( -23.80) >DroMoj_CAF1 18781 117 - 1 GAGUCGAGUUGCAAUCAACUGAGUGGCGCU---CAAGAUGCAGGCAGUAGCCAGGAAGCAGUCAUCGAAGAACACAAAACAGAGCAGUUACUAAAGAUCAAGCAGGAGAUUAUAGACUCA (((((.(((((....))))).(((((((((---(..(((((.(((....))).(....).).))))(.....)........)))).))))))...((((........))))...))))). ( -30.00) >DroAna_CAF1 15914 102 - 1 GAAUCCAGCUGCAAUCAAUUGGGAAAUAGC---CAGGAUGCGGGCAGCAGUCAAGAGGC---GUGCGAAGAGC------------AGCUUCUGAAGAUAAAGCAGGAGAUUAUAGACUCC ...(((.(((((.(((...(((.......)---)).)))....))))).(((.((((((---.(((.....))------------)))))))...)))......)))............. ( -29.80) >DroPer_CAF1 43450 117 - 1 GAGUCGAGCUGCAAUCAAUUGGUGGCUGGGCUGCACGAUGCAGGCAGCAGUCAAGAUGC---CAUUGAUGAACCGAAGACGGAGCAGCUAGUAAAGAUCAAGCAGGAGAUUAUAGACUCC (((((.((((((..(((.(..(((((..((((((.(......)...)))))).....))---)))..)))).(((....))).))))))......((((........))))...))))). ( -42.60) >consensus GAGUCCAGCUGCAAUCAAUUGGUAACUGGC___CAAGAUGCAGGCAGCAGUCAAGAAGC___CAGCGAAGAAC____________AGCUACUAAAGAUCAAGCAGGAGAUUAUAGACUCA (((((..(((((.(((....................)))....)))))...............................................((((........))))...))))). (-13.54 = -13.65 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:29 2006