| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,111,696 – 16,111,789 |
| Length | 93 |
| Max. P | 0.783551 |
| Location | 16,111,696 – 16,111,789 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 85.71 |
| Mean single sequence MFE | -23.20 |
| Consensus MFE | -20.24 |
| Energy contribution | -20.30 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.783551 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16111696 93 + 27905053 GGGGUGUGGCUUAUGGAAGGGGGGGAGCAUGCUGACGGCGUAAUGGUGUGUGCAUGUAAGCAUGUGUCCAACUAAUCGCGAGUCGAGUUUUUA ......(((((..(((..((..((..(((((((.((((((((......))))).))).)))))))..))..))..)))..)))))........ ( -28.20) >DroSec_CAF1 62404 75 + 1 ---------------GAA---GGGGAGCAUGCUGACGGUGUAAUGGUGUGUGCAUGUAAGCAUGUGUCCAACUAAUCGCAAGUCGAGUUUUUA ---------------...---.((..(((((((.(((.((((........))))))).)))))))..))((((...(....)...)))).... ( -21.80) >DroSim_CAF1 68642 75 + 1 ---------------GAA---GGGGAGCAUGCUGACGGUGUAAUGGUGUGUGCAUGUAAGCAUGUGUCCAACUAAUCGCAAGUCGAGUUUUUA ---------------...---.((..(((((((.(((.((((........))))))).)))))))..))((((...(....)...)))).... ( -21.80) >DroEre_CAF1 38768 75 + 1 ---------------GAA---GGGGUCCAUGCUGAUGGUGUAAUGGUGUGUGCAUGUGAGCAUGUGUCCAACUAAUCGCAAGUCGAGUUUUUA ---------------...---.(((..((((((.(((.((((........))))))).))))))..)))((((...(....)...)))).... ( -21.00) >consensus _______________GAA___GGGGAGCAUGCUGACGGUGUAAUGGUGUGUGCAUGUAAGCAUGUGUCCAACUAAUCGCAAGUCGAGUUUUUA ......................(((..((((((.(((.((((........))))))).))))))..)))((((...(....)...)))).... (-20.24 = -20.30 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:55 2006