| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,109,535 – 16,109,636 |
| Length | 101 |
| Max. P | 0.842600 |
| Location | 16,109,535 – 16,109,636 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 78.31 |
| Mean single sequence MFE | -33.17 |
| Consensus MFE | -20.56 |
| Energy contribution | -20.62 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.682790 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16109535 101 + 27905053 GCUGCAGCGCAUUGCAUUCAUGCGUGACCGUGUGUGGGUACGCAUGCUCGA--------GUGUGUGUAAGUGC----UGAAGACGGUGUAAGAACGGGAGAGGAAGAAGGAAA .((.((((((.((((((.(((...(((.(((((((....))))))).))).--------))).))))))))))----)).)).(.((......)).)................ ( -30.20) >DroSec_CAF1 60226 109 + 1 GCUGCAGCGCAUUGCAUUCAUGCGUGUCCGUGUGUGGGUACGCAUGCUCGGGUGUAUGAGUGUGUGUAAGUGC----UGAAGACGGUGUAAGAGCGGGAGAGGAAGAAGGAAA .((.((((((.((((((.(((((((..(((....)))..))))))(((((......)))))).))))))))))----)).)).(.((......)).)................ ( -34.80) >DroSim_CAF1 66369 109 + 1 GCUGCAGCGCAUUGCAUUCAUGCGUGCCCGUGUGUGGGUACGCAUGCUCGAGUGUAUGAGUGUGUGUAAGUGC----UGAAGACGGUGUAAGAGCGGGAGAGGAAGAAGGAAA .((.((((((.((((((.((((((((((((....)))))))))))(((((......)))))).))))))))))----)).)).(.((......)).)................ ( -38.30) >DroEre_CAF1 36490 109 + 1 GCUGCAGUGCAUUGCAUUCAUGCGUGCCCGUGUGUGGGUACGCAUGCUCGAGUGUGUGAGUGUGUGUAAGUGU----UGACGACGGUGGAAGAGCGGCAGAGGGCGAAGGAGA (((((..(((((.(((((((((((((((((....)))))))))((((....)))))))))))))))))....(----(.((....)).))...)))))............... ( -37.60) >DroYak_CAF1 80498 103 + 1 GCUGCAGCGCUUUGCAUUCAUGCGUGCCCGUGUGUGGGUACGCAUGCUCGAUGGUGAAAGUGUGUGUAUGUGU----UGAAGACGGCGGAAGA------GAGGGCGAAGGAAA (((((((((((((.((((((((((((((((....))))))))))))......))))))))))).))).(.(((----((....))))).)...------...)))........ ( -34.90) >DroAna_CAF1 37620 90 + 1 ACUGCAGCGUAUUGCAUUCAUGCAUGCUCGUGUGUGGGUACGCAAGCUUAA--------CUGUGUGUAAGAGUAUUUUUCGUACGA--GAGGA------GAGAGCG------- ...((.((((((.....((((((((....))))))))))))))...(((..--------((.(.((((.(((.....))).)))))--.))..------))).)).------- ( -23.20) >consensus GCUGCAGCGCAUUGCAUUCAUGCGUGCCCGUGUGUGGGUACGCAUGCUCGAGUGU_UGAGUGUGUGUAAGUGC____UGAAGACGGUGGAAGAGCGGGAGAGGAAGAAGGAAA ......((((.((((((.((((((((((((....)))))))))))).................))))))))))........................................ (-20.56 = -20.62 + 0.06)
| Location | 16,109,535 – 16,109,636 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.31 |
| Mean single sequence MFE | -20.05 |
| Consensus MFE | -15.74 |
| Energy contribution | -16.27 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16109535 101 - 27905053 UUUCCUUCUUCCUCUCCCGUUCUUACACCGUCUUCA----GCACUUACACACAC--------UCGAGCAUGCGUACCCACACACGGUCACGCAUGAAUGCAAUGCGCUGCAGC ...............................((.((----((............--------.....(((((((..((......))..)))))))...((...)))))).)). ( -19.00) >DroSec_CAF1 60226 109 - 1 UUUCCUUCUUCCUCUCCCGCUCUUACACCGUCUUCA----GCACUUACACACACUCAUACACCCGAGCAUGCGUACCCACACACGGACACGCAUGAAUGCAAUGCGCUGCAGC ...............................((.((----((...........(((........)))(((((((..((......))..)))))))..........)))).)). ( -20.00) >DroSim_CAF1 66369 109 - 1 UUUCCUUCUUCCUCUCCCGCUCUUACACCGUCUUCA----GCACUUACACACACUCAUACACUCGAGCAUGCGUACCCACACACGGGCACGCAUGAAUGCAAUGCGCUGCAGC ...............................((.((----((...........(((........)))(((((((.(((......))).)))))))..........)))).)). ( -24.00) >DroEre_CAF1 36490 109 - 1 UCUCCUUCGCCCUCUGCCGCUCUUCCACCGUCGUCA----ACACUUACACACACUCACACACUCGAGCAUGCGUACCCACACACGGGCACGCAUGAAUGCAAUGCACUGCAGC .............((((.((................----.............(((........)))(((((((.(((......))).)))))))........))...)))). ( -22.90) >DroYak_CAF1 80498 103 - 1 UUUCCUUCGCCCUC------UCUUCCGCCGUCUUCA----ACACAUACACACACUUUCACCAUCGAGCAUGCGUACCCACACACGGGCACGCAUGAAUGCAAAGCGCUGCAGC ..............------......((........----...........................(((((((.(((......))).)))))))..((((......)))))) ( -19.60) >DroAna_CAF1 37620 90 - 1 -------CGCUCUC------UCCUC--UCGUACGAAAAAUACUCUUACACACAG--------UUAAGCUUGCGUACCCACACACGAGCAUGCAUGAAUGCAAUACGCUGCAGU -------.......------.....--..(((.((.......)).)))...(((--------(...(((((.((......)).))))).((((....))))....)))).... ( -14.80) >consensus UUUCCUUCGCCCUCUCCCGCUCUUACACCGUCUUCA____ACACUUACACACACUCA_ACACUCGAGCAUGCGUACCCACACACGGGCACGCAUGAAUGCAAUGCGCUGCAGC ...................................................................(((((((.(((......))).)))))))..((((......)))).. (-15.74 = -16.27 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:54 2006