Locus 6147

Sequence ID 3R_DroMel_CAF1
Location 16,105,395 – 16,105,495
Length 100
Max. P 0.992340
window10021

overview

Window 1

Location 16,105,395 – 16,105,495
Length 100
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 88.83
Mean single sequence MFE -24.04
Consensus MFE -21.00
Energy contribution -19.92
Covariance contribution -1.08
Combinations/Pair 1.25
Mean z-score -2.16
Structure conservation index 0.87
SVM decision value 2.32
SVM RNA-class probability 0.992340
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16105395 100 - 27905053
U-UUUCCACAGUCUCACGCCUCCGAUUGUGGAAUUGUUUCGUUGACUACUCAAUCGAGAUGGCAACCCUGUUCUUGUUUUCUUCGUUCAUUUGAGCUUUUC
.-.((((((((((..........))))))))))(..(((((((((....)))).)))))..)......................((((....))))..... ( -23.70)
>DroSec_CAF1 55997 100 - 1
U-UUUCCACAAUCUCACGCCUUCGAUUGUGGAACUGUUUCGUUGACUGCUCAAUCGAGAUGGCAACCCUGUUCUGGUUUUCUCCGUUCAUUUGAGCUUUUC
.-.((((((((((..........))))))))))..............((((((..((.((((.((((.......))))....))))))..))))))..... ( -26.20)
>DroSim_CAF1 62121 100 - 1
U-UUUCCACAGUCUCACGCCUUCGAUUGUGGAACUGUUUCGUUGACUGCUCAAUCGAGAUGGCAACCCUGGUCUGGUUUUCUCCGUUCAUUUGAGCUUUUC
.-.((((((((((..........))))))))))..............((((((..((.((((.((((.......))))....))))))..))))))..... ( -26.20)
>DroEre_CAF1 32097 100 - 1
CAAUUCCACAGUCUCACGCCUCCGAUUGUGGAAUUGUUUUGUGGACUCGUCCAUCAAGAUGGCAACCCUAUUCUUGUUUACUCCGUUCAUUUAAGAU-UUC
(((((((((((((..........)))))))))))))((..((((((........(((((.((....))...)))))........))))))..))...-... ( -27.39)
>DroYak_CAF1 75279 99 - 1
U-UUUCUACAGUCUCACGCCUCCGAUUGUGGAAUUGUUUUGUCGACUGCUCAAUCAAGAUGGCAACCCUAUUCUGGUUUUCUCCGUUUAUUUAAGAU-UUC
.-.((((((((((..........))))))))))..((((((..(((.(...(((((..((((.....))))..)))))....).)))....))))))-... ( -16.70)
>consensus
U_UUUCCACAGUCUCACGCCUCCGAUUGUGGAAUUGUUUCGUUGACUGCUCAAUCGAGAUGGCAACCCUGUUCUGGUUUUCUCCGUUCAUUUGAGCUUUUC
...((((((((((..........))))))))))(..(((((((((....)))).)))))..)....................................... (-21.00 = -19.92 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:53 2006