| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,101,654 – 16,101,757 |
| Length | 103 |
| Max. P | 0.883383 |
| Location | 16,101,654 – 16,101,757 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 77.11 |
| Mean single sequence MFE | -34.64 |
| Consensus MFE | -12.69 |
| Energy contribution | -12.97 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.883383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16101654 103 + 27905053 AAAACUACGCACCUGAACC--ACUGACUCAG--------CCACCUGAUGAACAAGUUGGUUGGAGCAGCACUCGGUGGUUGGGUCUCUGGAAAUCAAAGCGUGUCAUGAGUCA-- .....(((((...(((.((--(..(((((((--------(((((.(((.((....)).))).(((.....)))))))))))))))..)))...)))..)))))..........-- ( -35.00) >DroSec_CAF1 52375 98 + 1 AAAACUACGCAGCUGAACC--ACUGACUCAG--------CCACCUGCUGAACAAGUUGGUUGGAGCAGCACUCGGUGGUUGGGUCUCUGGAAAUCA-----UGUCAUGAGUCA-- ...(((.((..(((((.((--(..(((((((--------((((((((((..(((.....)))...)))))...))))))))))))..)))...)))-----.))..)))))..-- ( -36.30) >DroSim_CAF1 58479 103 + 1 AAAACUACGCAGCUGAACC--ACUGACUCAG--------CCACCUGCUGAACAAGUUGGUUGGAGCAGCACUCGGUGGUUGGGUCUCUGGAAAUCAAAGCGUGUCAUGAGUCA-- .....(((((...(((.((--(..(((((((--------((((((((((..(((.....)))...)))))...))))))))))))..)))...)))..)))))..........-- ( -39.60) >DroEre_CAF1 28443 92 + 1 CAAACUACGCACCUGAACC--ACUGACUCAG--------CCACCUGCUAAACAAGUUGGU------AGCACUCGGUGGUUGGGUCUCUGGAA-----AGCGUGUCAUGAGUCA-- ...(((..((((((...((--(..(((((((--------((((((((((..........)------))))...))))))))))))..)))..-----)).))))....)))..-- ( -35.20) >DroYak_CAF1 71180 94 + 1 ---GCUAUGCACCUGAACU--ACUGACUCAG--------CCACCUGCUGAACAAGUUGGU------AGCACUCGGUGGUUGGGUCUCUGAAAAUCAAAGUGUGUCAUGAGUCA-- ---(((((((((((.....--...(((((((--------((((((((((..........)------))))...))))))))))))..((.....)).)).))).))).)))..-- ( -29.50) >DroAna_CAF1 32015 101 + 1 CAGACUACGCACCUGACUCUGACUGACUCAACUCGGCCACCACCUGCCUAACAAGUUGGC------GG-------CGGAA-AGCUUGUGAAAAGCAAACCACAUCAUGAGUCAGU ((((.............))))(((((((((..((.(((.(((.((........)).))).------))-------).)).-.((((.....))))...........))))))))) ( -32.22) >consensus AAAACUACGCACCUGAACC__ACUGACUCAG________CCACCUGCUGAACAAGUUGGU______AGCACUCGGUGGUUGGGUCUCUGGAAAUCAAAGCGUGUCAUGAGUCA__ .......................(((((((.........(((.((........)).)))............((((.((.....)).))))................))))))).. (-12.69 = -12.97 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:50 2006