| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,100,716 – 16,100,818 |
| Length | 102 |
| Max. P | 0.863366 |
| Location | 16,100,716 – 16,100,818 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 77.11 |
| Mean single sequence MFE | -24.33 |
| Consensus MFE | -10.88 |
| Energy contribution | -12.56 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.863366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16100716 102 + 27905053 GACGGAAUACUACAAAAAUCGGGUUGCCAUGGUGUGGGGUAACCCCCCAGUACCCCAGUACUUCAAUCCGCCGAUCCUCCAGCCACCGCCAAUCC-CCCAAUC (.(((...............((((((....(((((((((((.(......)))))))).)))).))))))((.(......).))..))).).....-....... ( -24.50) >DroSec_CAF1 51427 100 + 1 GACGGAAUACUACAAAAA-CGGGUUGCCAAGGUG-GGGGUAAACCCCCAGUACCCCAGUACUCCAAUCCCCCGAUCCACCAGCGCCCGCACAUCC-CCCAAUC ..................-(((((.((...((((-((((....)))))(((((....)))))...............))).))))))).......-....... ( -26.40) >DroSim_CAF1 57532 100 + 1 GACGGAAUACUACAAAAAUCGGGUUGCCAA-GUG-GGGGUAAACCCCCAGUACCCCAGUACUCCAAUCCCCCGAUCCACCAGCCCCCGCCAAUCC-CCCAAUC ...(((...........((((((.......-.((-((((....))))))((((....))))........))))))......((....))...)))-....... ( -25.80) >DroEre_CAF1 27472 79 + 1 GACGGCAUACUACAAAAAUCGGGUUGCCAAGUCG-GGGGUA------------CCCAGUACCCCAAUCCCCCGAUGCCCCA----------AACC-CCCAAUC ....................(((((.....((((-((((..------------..............))))))))......----------))))-)...... ( -22.39) >DroYak_CAF1 70245 80 + 1 GACGCAAUACUACAACAAUCGGGUUGCCAAGUCG-GGGGAA------------CCCAGUACGCCAAUCCCCCGAUACCCCA----------AUCCCCCCAGUC ....................((((((....((((-(((((.------------.............)))))))))....))----------))))........ ( -22.54) >consensus GACGGAAUACUACAAAAAUCGGGUUGCCAAGGUG_GGGGUAA_CCCCCAGUACCCCAGUACUCCAAUCCCCCGAUCCACCAGC__CCGC__AUCC_CCCAAUC ...(((.((((.........((....)).......((((((.........)))))))))).)))....................................... (-10.88 = -12.56 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:49 2006