Locus 6143

Sequence ID 3R_DroMel_CAF1
Location 16,091,135 – 16,091,229
Length 94
Max. P 0.909321
window10015 window10016

overview

Window 5

Location 16,091,135 – 16,091,229
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 92.91
Mean single sequence MFE -22.23
Consensus MFE -19.67
Energy contribution -20.12
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -2.16
Structure conservation index 0.88
SVM decision value 0.62
SVM RNA-class probability 0.802116
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16091135 94 + 27905053
UGCCUAUCUGCAUUCAACCGACAUUAGUGUGAAUUUAUUAAUUAAUCAGAUGGAUGUUUCAGUAAAGCAGGACGGUUGAAGACAGUUAGAUUAA
...(((.(((..(((((((((((((.((.(((..(((.....)))))).)).)))))....(.....)....))))))))..))).)))..... ( -22.30)
>DroSec_CAF1 48191 92 + 1
UGCCUAUCUGCAUUCAACCGACAUUAGUGUGA--UAAUAAAUUAAUCAGAUGGAUGUUCCAGUAAAGUAGUACGGUUGAAGACAGUUAGAUUAA
...(((.(((..(((((((((((((.((.(((--(.........)))).)).))))))...(((......))))))))))..))).)))..... ( -24.60)
>DroSim_CAF1 54294 94 + 1
UGCCUAUUUGCAUUCAACCGAAAUUAGUGUGAAUUUAUAAAUUAAUCAGAUGGAUAUUCCAGUAAAGUAGUACGGUUGAAGACAGUUAGAUUAA
...(((.(((..(((((((((((((......)))))....((((......(((.....)))......)))).))))))))..))).)))..... ( -19.80)
>consensus
UGCCUAUCUGCAUUCAACCGACAUUAGUGUGAAUUUAUAAAUUAAUCAGAUGGAUGUUCCAGUAAAGUAGUACGGUUGAAGACAGUUAGAUUAA
...(((.(((..(((((((((((((.((.(((.............))).)).))))))...(((......))))))))))..))).)))..... (-19.67 = -20.12 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 16,091,135 – 16,091,229
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 92.91
Mean single sequence MFE -19.17
Consensus MFE -16.69
Energy contribution -17.35
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.65
Structure conservation index 0.87
SVM decision value 1.06
SVM RNA-class probability 0.909321
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16091135 94 - 27905053
UUAAUCUAACUGUCUUCAACCGUCCUGCUUUACUGAAACAUCCAUCUGAUUAAUUAAUAAAUUCACACUAAUGUCGGUUGAAUGCAGAUAGGCA
....((((.((((.((((((((...............((((.....(((.............))).....)))))))))))).)))).)))).. ( -17.78)
>DroSec_CAF1 48191 92 - 1
UUAAUCUAACUGUCUUCAACCGUACUACUUUACUGGAACAUCCAUCUGAUUAAUUUAUUA--UCACACUAAUGUCGGUUGAAUGCAGAUAGGCA
....((((.((((.((((((((.((........(((.....)))..((((.........)--))).......)))))))))).)))).)))).. ( -22.90)
>DroSim_CAF1 54294 94 - 1
UUAAUCUAACUGUCUUCAACCGUACUACUUUACUGGAAUAUCCAUCUGAUUAAUUUAUAAAUUCACACUAAUUUCGGUUGAAUGCAAAUAGGCA
....((((..(((.((((((((...........(((.....)))..(((.............))).........)))))))).)))..)))).. ( -16.82)
>consensus
UUAAUCUAACUGUCUUCAACCGUACUACUUUACUGGAACAUCCAUCUGAUUAAUUUAUAAAUUCACACUAAUGUCGGUUGAAUGCAGAUAGGCA
....((((.((((.((((((((...........(((.....)))..(((.............))).........)))))))).)))).)))).. (-16.69 = -17.35 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:48 2006