| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,084,467 – 16,084,563 |
| Length | 96 |
| Max. P | 0.823091 |
| Location | 16,084,467 – 16,084,563 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 79.73 |
| Mean single sequence MFE | -19.37 |
| Consensus MFE | -15.37 |
| Energy contribution | -15.57 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.823091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16084467 96 + 27905053 CCUUUGAAA--UAUUCGAUGAGUAAGCC---GUCUUGGCCUAAUUAGCGUUUCUGGUAUUACUCAUCGCUUAUCUCCCACUCCACACAGAUACAAAUCCAG .....((.(--((..(((((((((((((---(....(((((....)).)))..)))).))))))))))..))).))......................... ( -19.80) >DroSec_CAF1 41387 96 + 1 CCUUUGAAG--UAUUCGAUGAGUAAGCC---GUCUUGGCCUCAUUAGCGUUUCUGGUAUUACUCGUCGCUUAUCCCCCUCUCCACACAGAUACAAAUCCAG ..((((..(--((..(((((((((((((---.....)))...(((((.....))))).))))))))))..))).....(((......)))..))))..... ( -18.40) >DroSim_CAF1 47617 95 + 1 CCUUUGAAG--UAUUCGAUGAGUAAGCC---GUCUUGGCCUCAUUAGCGUUUCUGGUAUUACUCAUCGCUUAUCCCCC-CUCCACACAGAUACAAAUCCAG ........(--((..(((((((((((((---.....)))...(((((.....))))).))))))))))..))).....-...................... ( -18.30) >DroEre_CAF1 17033 96 + 1 CCUUUGAAAAUUUUUCGAUGAGUAAGCC---AUCUUGGCCUCAUUAGCGUUUCUGCUAUUACUCAUCGCUUAUCGACCUCUC--UACAGAUCCACAUCCAC ...............(((((((((((((---.....))).....(((((....)))))))))))))))..............--................. ( -20.50) >DroYak_CAF1 60066 82 + 1 CCCUUAAAA--UAUUCGAUGAGUAAGCC---GUCUUGGCCUCAUUAGCGUUUCUGGUAUUACUCAUCGC------------C--CACAGAUCCACAUCCAG .........--....(((((((((((((---.....)))...(((((.....))))).)))))))))).------------.--................. ( -17.00) >DroAna_CAF1 22140 84 + 1 CCUUUGAAG--UCUUCGAUGAGUAAGCCAUCGUCUUGGCCCCAUUAGGGUUACUGGUAUUACUCAUC-CGUAGCUCCCAGUCC---------CA-----GU ...(((.((--(..(.(((((((((((((......))))(((....))).........)))))))))-.)..)))..)))...---------..-----.. ( -22.20) >consensus CCUUUGAAA__UAUUCGAUGAGUAAGCC___GUCUUGGCCUCAUUAGCGUUUCUGGUAUUACUCAUCGCUUAUCCCCC_CUCC_CACAGAUACAAAUCCAG ...............(((((((((((((........)))...(((((.....))))).))))))))))................................. (-15.37 = -15.57 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:44 2006