| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,083,572 – 16,083,668 |
| Length | 96 |
| Max. P | 0.522251 |
| Location | 16,083,572 – 16,083,668 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 85.21 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -22.36 |
| Energy contribution | -21.50 |
| Covariance contribution | -0.86 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.86 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522251 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16083572 96 - 27905053 ACUGGAUGCC---AUAAGAAGUUGUACUACUACAACUC-GAUGUUUAUAGUAUUUGUAGAAUGCCGAGAGGCGAGUCUGC--------AAGACGUACUACAAGAUACA ..........---....((.((((((....))))))))-(.(((((.(((((((((((((.((((....))))..)))))--------))...))))))..)))))). ( -25.70) >DroPse_CAF1 40632 105 - 1 GCGGGAUGCCCAUAUAAGAAGUUGUAG---UACAACUCCAAUGUUUAUAGUAUUUGUAGAAUGCCGAGGGGCCAGUCUGCACGACAGCCAGGCGUACUAUAAGAUACA ..(((...)))......(.(((((...---..))))).)..........((((((((((.(((((....(((..(((.....))).))).))))).)))).)))))). ( -30.00) >DroEre_CAF1 16154 93 - 1 ACUGGAUGCC---AUAAGAAGUUGUAC---UACAACUC-GAUGUUUAUAGUAUUUGUAGAAUGCCGAGAGGCGAGUCUGC--------AAGACGUACUACAAGAUACA ..........---....((.((((...---..))))))-(.(((((.(((((((((((((.((((....))))..)))))--------))...))))))..)))))). ( -23.90) >DroYak_CAF1 59218 93 - 1 ACUGAAUGCC---AUAAGAAGUUGUAC---UACAGCUC-CAUGUUUAUAGUAUUUGUAGAAUGCCGAGAGGCGAGUCUGC--------AAGACGAACUACAAGAUACA ..........---....(.(((((...---..))))).-).........((((((((((..((((....)))).(((...--------..)))...)))).)))))). ( -23.60) >DroAna_CAF1 21112 101 - 1 UCUGGAUGCC---AUAAGAAGUUGUAC---UACAACUC-GAUGUUUGUAGUAUUUGUAGAAUGUUGAGGGGCGAGUCUGCACGACAGCAAGACGUACUACAAGAUACA ..........---..........((((---((((((..-...).)))))))))((((((.(((((.....((..(((.....))).))..))))).))))))...... ( -23.00) >DroPer_CAF1 43060 105 - 1 GCGGGAUGCCCAUAUAAGAAGUUGUAG---UACAACUCCCAUGUUUAUAGUAUUUGUAGAAUGCCGAGGGGCCAGUCUGCACGACAGCCAGGCGUACUAUAAGAUACA ..(((...))).((((((.(((((...---..)))))......))))))((((((((((.(((((....(((..(((.....))).))).))))).)))).)))))). ( -30.00) >consensus ACUGGAUGCC___AUAAGAAGUUGUAC___UACAACUC_GAUGUUUAUAGUAUUUGUAGAAUGCCGAGAGGCGAGUCUGC________AAGACGUACUACAAGAUACA ...................(((((((....)))))))............((((((((((...(((....)))..((((...........))))...)))).)))))). (-22.36 = -21.50 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:43 2006