Locus 6139

Sequence ID 3R_DroMel_CAF1
Location 16,080,438 – 16,080,531
Length 93
Max. P 0.897401
window10010

overview

Window 0

Location 16,080,438 – 16,080,531
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 85.64
Mean single sequence MFE -26.63
Consensus MFE -19.14
Energy contribution -22.00
Covariance contribution 2.86
Combinations/Pair 1.04
Mean z-score -3.91
Structure conservation index 0.72
SVM decision value 1.00
SVM RNA-class probability 0.897401
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16080438 93 - 27905053
CAAUAGCAAUAACAAAAGCAACGCAUCGCUCAAAUCUCAUGCGAUGCAGUUGCCAGCGAGAGUUUUGUUGCUAAUUACAUACACACAUCGAUG
...(((((((((.....((((((((((((...........))))))).))))).(((....)))))))))))).................... ( -29.30)
>DroSec_CAF1 37322 93 - 1
CAAUAGCAAUAACAAAAGCAACGCAUCGCUCAAAUCUCAUGCGAUGCAGUUGCCAGCGAGAGUUUUGUUGCUAAUUACACACACACAUCGAUG
...(((((((((.....((((((((((((...........))))))).))))).(((....)))))))))))).................... ( -29.30)
>DroSim_CAF1 43532 93 - 1
CAAUAGCAAUAACAAAAGCAACGCAUCGCUCAAAUCUCAUGCGAUGCAGUUGCCAGCGAGAGUUUUGUUGCUAAUUACACACACACAUCGAUG
...(((((((((.....((((((((((((...........))))))).))))).(((....)))))))))))).................... ( -29.30)
>DroEre_CAF1 13160 93 - 1
CAAUAGCAAUAACAAAAGCAACGCAUCGCUUAAAUCUCAUGCGAUGCAGUUGCCAGCGAGAGUUUUGUUGCUAAUUACACACACACAUCGAUG
...(((((((((.....((((((((((((...........))))))).))))).(((....)))))))))))).................... ( -29.30)
>DroYak_CAF1 56365 91 - 1
--AUAGCAAUAACAAAAGCAACGCAUCGCUUAAAUCUCAUGCGAUGCAGUUGCCAGCGAGAGUUUUGUUGCUAAUUACACACACACAUCGAUG
--.(((((((((.....((((((((((((...........))))))).))))).(((....)))))))))))).................... ( -29.30)
>DroAna_CAF1 18884 71 - 1
---------------ACGCAGCACAUCAUUUGAAUCUCAUUCGAUGCAGU-------GAGAGUUUUGUUGCUAAUUACACCACUACACAGCUG
---------------..((((((((.....))..(((((((......)))-------))))....))))))...................... ( -13.30)
>consensus
CAAUAGCAAUAACAAAAGCAACGCAUCGCUCAAAUCUCAUGCGAUGCAGUUGCCAGCGAGAGUUUUGUUGCUAAUUACACACACACAUCGAUG
...(((((((((.....((((((((((((...........))))))).))))).(((....)))))))))))).................... (-19.14 = -22.00 +   2.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:42 2006