Locus 6138

Sequence ID	3R_DroMel_CAF1
Location	16,080,079 – 16,080,172
Length	93
Max. P	0.812273

overview

Window 9

Location	16,080,079 – 16,080,172
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	94.19
Mean single sequence MFE	-21.56
Consensus MFE	-16.72
Energy contribution	-17.48
Covariance contribution	0.76
Combinations/Pair	1.10
Mean z-score	-2.02
Structure conservation index	0.78
SVM decision value	0.65
SVM RNA-class probability	0.812273
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16080079 93 + 27905053
UGCCUUUUUGUAAACAAAAACAAUGGGGUGAAAAUCAGCUACUGAAAUUAGCUAACCAUUAAAGUUACUGGUUUUGGUGGAUUUUAUUAGGGA
.((((..((((........))))..)))).........((((..(((((((.((((.......)))))))))))..))))............. ( -22.50)
>DroSec_CAF1 36950 93 + 1
UGCCUUUUUGUAAACAAAAACAAUGGGGUGAAAAUCAGCUACUGAAAUUAGCUAACGAUAAAAGUUACUGGUUUUGGUGGAUUUUAUUAGGGA
.((((..((((........))))..)))).........((((..(((((((.((((.......)))))))))))..))))............. ( -23.70)
>DroSim_CAF1 43161 93 + 1
UGCCUUUUUGUAAACAAAAACAAUGGGGUGAAAAUCAGCUACUGAAAUUAGCUAACGAUAAAAGUUACUGGUUUUGGUGGAUUUUAUUAGGGA
.((((..((((........))))..)))).........((((..(((((((.((((.......)))))))))))..))))............. ( -23.70)
>DroEre_CAF1 12758 93 + 1
CGCCUUUUUGUAAACAAAAACAAUGGGCUGAAAAUCAGCUACUGAAAUUAGCUAAUGAUAAAAGUAACUGGUUUUGGUGGAUUUUAUUAGGGA
.((((..((((........)))).))))..((((((((.((((...((((.....))))...)))).)))))))).................. ( -19.20)
>DroYak_CAF1 55988 93 + 1
UGCCUUUUCGUAAACAUAAACAAUGGAAUGAAAAUCAGCUACUGAAAUUAGCCAACAGUAAAAGUUACUGGUUUUGGUGUAUUUUAUUAGGGA
..(((((((((...(((.....)))..)))))))....(((.((((((..((((((((((.....)))))...)))))..)))))).))))). ( -18.70)
>consensus
UGCCUUUUUGUAAACAAAAACAAUGGGGUGAAAAUCAGCUACUGAAAUUAGCUAACGAUAAAAGUUACUGGUUUUGGUGGAUUUUAUUAGGGA
..((((((((....))))).......(((((((.....((((..(((((((.((((.......)))))))))))..)))).)))))))))).. (-16.72 = -17.48 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:41 2006