Locus 6137

Sequence ID 3R_DroMel_CAF1
Location 16,078,414 – 16,078,506
Length 92
Max. P 0.952564
window10007 window10008

overview

Window 7

Location 16,078,414 – 16,078,506
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 86.85
Mean single sequence MFE -30.14
Consensus MFE -20.16
Energy contribution -22.60
Covariance contribution 2.44
Combinations/Pair 1.10
Mean z-score -3.29
Structure conservation index 0.67
SVM decision value 1.42
SVM RNA-class probability 0.952564
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16078414 92 + 27905053
CUUGUAAGAUUUUGCCCAAUCCGGCCAACGGUCCCACUUUGGGGGUAUUUUCUCAAAUGGGGCAAAUGGUCUCCAGCAGAUUCUCACUUCAU
...((.(((.(((((.......(((((...((((((.((((((((....))))))))))))))...)))))....))))).))).))..... ( -31.10)
>DroSec_CAF1 35269 91 + 1
UUUGUAAGAUUUUGCCAAAUCCGACCAACGGUCCCACU-UGGGGGUAUUUUCCCAAGUGGGGCAAAUGGUCUCCAGCAGAUUCUCACUUCAU
...((.(((.(((((.......(((((...((((((((-((((((....))))))))))))))...)))))....))))).))).))..... ( -40.80)
>DroSim_CAF1 41470 92 + 1
UUUGUAAGAUUUUGCCAAAUCCGACCAACGGUCCCACUUUGGGGGUAUUUUCUCAAGUGGGGCAAAUGGUCUCCAGCAGAUUCUCACUUCAU
...((.(((.(((((.......(((((...(((((((((.(((((....))))))))))))))...)))))....))))).))).))..... ( -34.00)
>DroEre_CAF1 11031 91 + 1
UCUGCAAGAAUUUUCUCAAUCUGAGCAACGGUCCCACUGUGG-GGUAAUUUCUCCAAUGGGGCAAACGGUCUCCAGUAGAUUCUCACUUAAU
(((((..((......)).....((((....((((((...(((-((......))))).)))))).....).)))..)))))............ ( -23.80)
>DroYak_CAF1 54329 92 + 1
UCUGAAAGAAUUAUCAAGAUCUGAGCAACGGUCCCACUUUGGGGGUAAUUUCUCAAACGGGGAAAACGGUCUCCAGUAGAUUCUCACUUCAU
.................((..((((...((.((((..((((((((....))))))))..))))...))((((.....)))).))))..)).. ( -21.00)
>consensus
UUUGUAAGAUUUUGCCAAAUCCGACCAACGGUCCCACUUUGGGGGUAUUUUCUCAAAUGGGGCAAAUGGUCUCCAGCAGAUUCUCACUUCAU
...((.(((.(((((.......(((((...((((((.((((((((....))))))))))))))...)))))....))))).))).))..... (-20.16 = -22.60 +   2.44)

alignment

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secondary structure

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dotplot

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Window 8

Location 16,078,414 – 16,078,506
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 86.85
Mean single sequence MFE -27.73
Consensus MFE -19.42
Energy contribution -20.34
Covariance contribution 0.92
Combinations/Pair 1.27
Mean z-score -2.18
Structure conservation index 0.70
SVM decision value 0.58
SVM RNA-class probability 0.788850
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16078414 92 - 27905053
AUGAAGUGAGAAUCUGCUGGAGACCAUUUGCCCCAUUUGAGAAAAUACCCCCAAAGUGGGACCGUUGGCCGGAUUGGGCAAAAUCUUACAAG
.....((((((.......(....)..(((((((.(((((.(..(((...(((.....)))...)))..)))))).))))))).))))))... ( -27.40)
>DroSec_CAF1 35269 91 - 1
AUGAAGUGAGAAUCUGCUGGAGACCAUUUGCCCCACUUGGGAAAAUACCCCCA-AGUGGGACCGUUGGUCGGAUUUGGCAAAAUCUUACAAA
.....((((((.(.(((..(((((((...(.((((((((((........))))-)))))).)...)))))...))..))).).))))))... ( -40.20)
>DroSim_CAF1 41470 92 - 1
AUGAAGUGAGAAUCUGCUGGAGACCAUUUGCCCCACUUGAGAAAAUACCCCCAAAGUGGGACCGUUGGUCGGAUUUGGCAAAAUCUUACAAA
.....((((((.(.(((..(((((((...(.(((((((...............))))))).)...)))))...))..))).).))))))... ( -30.06)
>DroEre_CAF1 11031 91 - 1
AUUAAGUGAGAAUCUACUGGAGACCGUUUGCCCCAUUGGAGAAAUUACC-CCACAGUGGGACCGUUGCUCAGAUUGAGAAAAUUCUUGCAGA
.....(..(((((((.((((.(((.((....(((((((..(........-)..))))))))).)))..))))....)))...))))..)... ( -22.80)
>DroYak_CAF1 54329 92 - 1
AUGAAGUGAGAAUCUACUGGAGACCGUUUUCCCCGUUUGAGAAAUUACCCCCAAAGUGGGACCGUUGCUCAGAUCUUGAUAAUUCUUUCAGA
.(((((.((..(((....(((((....)))))..(((((((.(((....(((.....)))...))).)))))))...)))..)).))))).. ( -18.20)
>consensus
AUGAAGUGAGAAUCUGCUGGAGACCAUUUGCCCCAUUUGAGAAAAUACCCCCAAAGUGGGACCGUUGGUCGGAUUUGGCAAAAUCUUACAAA
.....((((((.(.((((((((((((.....(((((((...............))))))).....)))))...))))))).).))))))... (-19.42 = -20.34 +   0.92)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:40 2006