| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,078,160 – 16,078,293 |
| Length | 133 |
| Max. P | 0.976896 |
| Location | 16,078,160 – 16,078,269 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 70.35 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -13.42 |
| Energy contribution | -14.54 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.976896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16078160 109 - 27905053 AUUUAU-------ACAAAGAUU--GUAUGAACUGGCUUGUGUACAAUCUAUCGUUAAGUUAGUCAGUACACGAACCUCUACAGUUCUACACUUCAGUCUGGCAAUGCC-CAACGUUCUU ......-------.....((.(--(((.(((((((.((((((((...(((.(.....).)))...)))))))).)).....)))))))))..)).((..(((...)))-..))...... ( -24.60) >DroSec_CAF1 35120 99 - 1 --------------------UUGGGUAUUUACAGGUUUGUGUACAAUCUAUCGUUAAGUUAGUCAGUGCACGAACCUCUACCAUUCUACACAUCAGGUUGGCCACGCCCCCACCUGCUU --------------------...((((.....((((((((((((...(((.(.....).)))...)))))))))))).))))...........(((((.(((...)))...)))))... ( -29.80) >DroSim_CAF1 41321 99 - 1 --------------------UUGGGUAUUUACAGGUUUGUGUACAAUCUAUCGUUAAGUUAGUCAGUGUACGAACCUCUACCAUUCUACACAUCAGGUUGGCAACGCCCCCACCUGCUU --------------------...((((.....((((((((((((...(((.(.....).)))...)))))))))))).))))...........(((((.(((...)))...)))))... ( -24.90) >DroEre_CAF1 10778 114 - 1 AUGUAUAUACAUAACAAAAAUG--UUAAAAACAGGUUUGUGUACAAUCUAUCGUUAAGAUAGUCGAUGCACUCACCCAUAUUAUUCUCCACUUCAGUAUGGCAACGCC-A--CCUGCUU ...........(((((....))--)))....(((((..(((((....(((((.....)))))....)))))....(((((((............))))))).......-)--))))... ( -22.00) >DroYak_CAF1 54069 109 - 1 AAUUG------UAACGAUAAUG--UUAAGAAAUGGUAUGUGAACAAUCUAGCGUUAAGUUAGUCGAUGCACGAACCCACAUUG-UCUACACUACAGAAUGGCAACGCC-AUACCUGCUU ...((------((..(((((((--(..(....)(((.((((......(((((.....)))))......)))).))).))))))-))))))...(((.(((((...)))-))..)))... ( -25.70) >consensus A__U_________AC_A__AUU__GUAUGAACAGGUUUGUGUACAAUCUAUCGUUAAGUUAGUCAGUGCACGAACCUCUACCAUUCUACACUUCAGGAUGGCAACGCC_CCACCUGCUU .................................(((((((((((...(((.(.....).)))...))))))))))).......................(((...)))........... (-13.42 = -14.54 + 1.12)
| Location | 16,078,199 – 16,078,293 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 63.53 |
| Mean single sequence MFE | -22.11 |
| Consensus MFE | -10.53 |
| Energy contribution | -11.53 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.776976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16078199 94 - 27905053 -A-UUUACUUUU-AGCAUGGU-----------UUGCGAAUUUAU-------ACAAAGAUUGUAUGAACUGGCUUGUGUACAAUCUAUCGUUAAGUUAGUCAGUACACGAACCUCU -.-.........-.....(((-----------((((.(.(((((-------(((.....)))))))).).))..((((((...(((.(.....).)))...)))))))))))... ( -22.70) >DroEre_CAF1 10815 113 - 1 CACGUUAUG--ACAACAAGAUUUAUAUUCGUAUUACAUAUGUAUAUACAUAACAAAAAUGUUAAAAACAGGUUUGUGUACAAUCUAUCGUUAAGAUAGUCGAUGCACUCACCCAU ...((((((--.(.....)...(((((.(((((...))))).)))))))))))................(((..(((((....(((((.....)))))....)))))..)))... ( -21.30) >DroYak_CAF1 54107 109 - 1 CACUUUAUUUUUUGACGAGAUUUAUAUUCGUUUUACAUAAUUG------UAACGAUAAUGUUAAGAAAUGGUAUGUGAACAAUCUAGCGUUAAGUUAGUCGAUGCACGAACCCAC ......(((((((((((..........((((..((((....))------))))))...)))))))))))(((.((((......(((((.....)))))......)))).)))... ( -22.32) >consensus CACUUUAUUUUU_AACAAGAUUUAUAUUCGU_UUACAUAUUUAU_____UAACAAAAAUGUUAAGAACUGGUUUGUGUACAAUCUAUCGUUAAGUUAGUCGAUGCACGAACCCAU .....................................................................(((.((((((....(((((.....)))))....)))))).)))... (-10.53 = -11.53 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:38 2006