Locus 6132

Sequence ID 3R_DroMel_CAF1
Location 16,060,998 – 16,061,096
Length 98
Max. P 0.940585
window9995

overview

Window 5

Location 16,060,998 – 16,061,096
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 89.90
Mean single sequence MFE -32.50
Consensus MFE -25.36
Energy contribution -27.04
Covariance contribution 1.68
Combinations/Pair 1.07
Mean z-score -2.19
Structure conservation index 0.78
SVM decision value 1.31
SVM RNA-class probability 0.940585
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16060998 98 - 27905053
GCCGGAAUUUAUGGUCGAGAGAUAGGGCAGUAACUGCGCCCAACCAGCUGCACAUAAUGUGCAGCAAUCACAUCAACUUGUGAUGGGUGCUACGUGAU
(((..........(((....)))..))).(((...((((((.....(((((((.....))))))).((((((......)))))))))))))))..... ( -37.70)
>DroSec_CAF1 20788 98 - 1
GCCGGAAUUUAUGGUCGAGAGAUAGGGCAGUAACUGCGCCCAACCAGCUGCACAUAAUGUGCAGCAAUCACAUCAACUUGUGAUGGGUGCUACGUGAU
(((..........(((....)))..))).(((...((((((.....(((((((.....))))))).((((((......)))))))))))))))..... ( -37.70)
>DroSim_CAF1 19326 98 - 1
GACGGAAUUUAUGGUCGAGAGAUAGGGCAGUAACUGCGCCCAACCAGCUGCACAUAAUGUGCAGCAAUCACAUCAACUUGUGAUGGGUGCUACGUGAU
........((((((((....)))............((((((.....(((((((.....))))))).((((((......))))))))))))..))))). ( -37.30)
>DroYak_CAF1 27415 97 - 1
ACCGGAAUUUAUGGUCCAGAGAUAGGGCAGUAACUGCGCCCAACCAGCUGCACAUAAUGU-CUGCAAUCACAUCAACUUGCGAUGGGUGCUACGUGGU
((((....((((.((((.......)))).))))..((((((.....((.(((.....)))-..)).(((.((......)).)))))))))....)))) ( -24.60)
>DroAna_CAF1 4586 97 - 1
GUGGGAAUUUAUGGGCCGGAGAUAGUGAAGUUACUGCGGCCUAGCAGCUGCACUUAAUG-GUUGCAAUCAAAUCAACUUGUGAUGGGGGAAACGUGAU
(..((......(((((((.((.(((.....))))).)))))))((((((.........)-)))))...........))..).((.(.(....).).)) ( -25.20)
>consensus
GCCGGAAUUUAUGGUCGAGAGAUAGGGCAGUAACUGCGCCCAACCAGCUGCACAUAAUGUGCAGCAAUCACAUCAACUUGUGAUGGGUGCUACGUGAU
........((((((((....)))............((((((.....(((((((.....))))))).((((((......))))))))))))..))))). (-25.36 = -27.04 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:28 2006