Locus 6131

Sequence ID 3R_DroMel_CAF1
Location 16,060,136 – 16,060,229
Length 93
Max. P 0.933709
window9994

overview

Window 4

Location 16,060,136 – 16,060,229
Length 93
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.59
Mean single sequence MFE -29.95
Consensus MFE -21.97
Energy contribution -21.58
Covariance contribution -0.39
Combinations/Pair 1.10
Mean z-score -2.47
Structure conservation index 0.73
SVM decision value 1.23
SVM RNA-class probability 0.933709
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16060136 93 + 27905053
----------------------ACACACGCAUGAACUGCUUGAGUGCACGGCGGCGUAUACUUAAUUUUUGCUCGUUCGUGCGCUCCAUUCCGCUUCCUCGGA-----ACUUCUAACUCA
----------------------......(((.....)))..(((((((((((((((.............))).)).))))))))))..(((((......))))-----)........... ( -26.62)
>DroPse_CAF1 18035 117 + 1
CUCUGUUCUAUAGGGUAUUUUUGUACACGCAUGAGCUGCUUGAGUGCACGAUGGCGUAUACUUAAUUUUUGCUCGUUCGUGCGCUCAAUUCCGCUUCCGCGCUG---CUCUUCUAACUCA
..........((((((((....))))......((((.((((((((((((((.((((.............))))...))))))))))))....((....)))).)---))).))))..... ( -35.32)
>DroSim_CAF1 18468 93 + 1
----------------------ACACACGCAUGAACUGCUUGAGUGCACGGCGGCGUAUACUUAAUUUUUGCUCGUUCGUGCGCUCCAUUCCGCUUCCUCGGA-----ACUUCUAACUCA
----------------------......(((.....)))..(((((((((((((((.............))).)).))))))))))..(((((......))))-----)........... ( -26.62)
>DroYak_CAF1 26538 98 + 1
----------------------ACACACGCAUGAACUGCUUGGGUGCACGGCGGCGUAUACUUAAUUUUUGCUCGUUCGUGCGCUCGAUUCCGCUUCCUCGGAAUCUAACUUCUAACUCA
----------------------......(((.....)))..(((((((((((((((.............))).)).))))))))))(((((((......))))))).............. ( -31.32)
>DroAna_CAF1 3645 93 + 1
----------------------ACACACGCAUGAGCUGCUUGAGUGCACGGUGCCGUAUACUUAAUUUUUGCUCGUUCGUGCGCUCAAUUCCGCAUCCUCGCA-----ACUCCUAACUCA
----------------------.....(((((((((.(((((((((.(((....))).))))))).....))..))))))))).........((......)).-----............ ( -24.50)
>DroPer_CAF1 20109 116 + 1
CUCUGU-CUAUAGGGUAUUUUUGUACACGCAUGAGCUGCUUGAGUGCACGAUGGCGUAUACUUAAUUUUUGCUCGUUCGUGCGCUCAAUUCCGCUUCCGCGCUG---CUCUUCUAACUCA
......-...((((((((....))))......((((.((((((((((((((.((((.............))))...))))))))))))....((....)))).)---))).))))..... ( -35.32)
>consensus
______________________ACACACGCAUGAACUGCUUGAGUGCACGGCGGCGUAUACUUAAUUUUUGCUCGUUCGUGCGCUCAAUUCCGCUUCCUCGCA_____ACUUCUAACUCA
...........................(((((((((.(((((((((.(((....))).))))))).....))..)))))))))..................................... (-21.97 = -21.58 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:27 2006