Locus 6130

Sequence ID 3R_DroMel_CAF1
Location 16,058,978 – 16,059,083
Length 105
Max. P 0.584099
window9993

overview

Window 3

Location 16,058,978 – 16,059,083
Length 105
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 81.07
Mean single sequence MFE -23.62
Consensus MFE -13.11
Energy contribution -13.00
Covariance contribution -0.11
Combinations/Pair 1.12
Mean z-score -2.06
Structure conservation index 0.56
SVM decision value 0.10
SVM RNA-class probability 0.584099
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16058978 105 - 27905053
AUGCUGAAUCUUCUCC--CGGAAAUCCCCCCUCCU-GGG-CAAUAAAAUAAUAUUGUCUUAU--CUAACUAUGUGCGCAAUGCACAUCAACAA----AGGGACAAAUG---AAAAAAG
.............(((--((((.........))).-(((-(((((......))))))))...--......((((((.....))))))......----.))))......---....... ( -19.70)
>DroPse_CAF1 16908 107 - 1
----GGGGUCGCCUCC--C----AUCCCCCUGCCAGGGG-CAAUAAAAUAAUAUUGUCUUAUCUCUAACUAUGUGCGCAAUGCACAACAACAAUAGAAGGGACAAAUGCGGGAAAAAG
----((((.....)))--)----.((((..((((...))-))...........((((((..(((.......(((((.....)))))........)))..))))))....))))..... ( -28.36)
>DroSim_CAF1 17370 105 - 1
AUGCUGGAUCUCCUCC--CGGCAAUCCCCCCUCCU-GGG-CAAUAAAAUAAUAUUGUCUUAU--CUAACUAUGUGCGCAAUGCACAUCAACAA----AGGGACAAAUG---AAAAAAG
.((((((........)--))))).((((.......-(((-(((((......))))))))...--......((((((.....))))))......----.))))......---....... ( -26.90)
>DroYak_CAF1 25484 104 - 1
AUACCGAAUCUCCACC--CGGAAAUCCCCCCU-CU-GGG-CAAUAAAAUAAUAUUGUCUUAU--CUAACUAUGUGCGCAUUGCACAUCAACAA----AGGGACAAAUG---AAAAAAG
...(((..........--))).......((((-.(-(((-(((((......)))))))....--......((((((.....))))))...)).----)))).......---....... ( -21.70)
>DroAna_CAF1 2812 109 - 1
AUAGAGAAUCUCUUCCACCACAUAUCCCCGCCCCU-GGGACAAUAAAAUAAUAUUGCCUUAU--CUAACUAUGUGCGCAAUGCACAACAACAA----AAGGACAAAUG--GAAAAAAG
...(((...)))(((((.......((((.......-)))).............(((((((..--.......(((((.....))))).......----)))).))).))--)))..... ( -18.59)
>DroPer_CAF1 18989 104 - 1
----GG---CCCCUCC--C----AUUCCCCUGCCAGGGG-CAAUAAAAUAAUAUUGUCUUAUCUCUAACUAUGUGCGCAAUGCACAACAACAAUAGAAGGGACAAAUGCGGAUAAAAG
----.(---(((((..--(----(......))..)))))-)............((((((..(((.......(((((.....)))))........)))..))))))............. ( -26.46)
>consensus
AU_CGGAAUCUCCUCC__CGGAAAUCCCCCCUCCU_GGG_CAAUAAAAUAAUAUUGUCUUAU__CUAACUAUGUGCGCAAUGCACAACAACAA____AGGGACAAAUG___AAAAAAG
........................((((........(((.(((((......))))))))............(((((.....)))))............))))................ (-13.11 = -13.00 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:26 2006