Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,270,226 – 2,270,319 |
Length | 93 |
Max. P | 0.970009 |
Location | 2,270,226 – 2,270,319 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 84.95 |
Mean single sequence MFE | -30.52 |
Consensus MFE | -24.90 |
Energy contribution | -25.06 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -2.29 |
Structure conservation index | 0.82 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.970009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2270226 93 - 27905053 UGAGUGCGAGCUGGAACUCGACGAUGAGGAUCCGCUAUGGGAACCUCCAUCUUCGACAAACGCAGCAACCACUUCCGGCUCGAGUUCUGAAUC .(((..(((((((((..((((.(((((((.(((......))).))).)))).)))).......((......)))))))))))..)))...... ( -33.80) >DroSec_CAF1 6800 93 - 1 CGAGUGAGAGCUGGACCUGGACGAUGAGGAUCCGCUAUGGGAACCUCCAUCUUCGCCCAACACUUCAACCUCUACCGGCUCGAAUUCUGAAUC .((((..(((((((....((..(((((((.(((......))).))).))))...(.....).......))....)))))))..))))...... ( -28.70) >DroSim_CAF1 6810 93 - 1 CGAGUGAGAGCUGGAACUGGACGAUGAGGAUCCGCUAUGGGAACCUCCAUCUUCGCCCAACACUUCAACCCCUUCCGGCUCGAAUUCUGAAUC .((((..(((((((((..((..(((((((.(((......))).))).))))...(.....).......))..)))))))))..))))...... ( -31.80) >DroEre_CAF1 6855 93 - 1 UGAGUUAAGGUUGGAACUGGAUGAUGAGGAUCCGAUAUAGGAACCUCCAUCCUCGCCCAACACUUCAACCUCUUCCGGCUCAGAUUCCGAGUC .(((((((((((((....(((((..((((.(((......))).)))))))))....))))).))).)).)))....(((((.......))))) ( -31.60) >DroYak_CAF1 6476 93 - 1 CGAGUUAAAGCUGGAACUUGACGAUGAGGAUCCAUUAUGGGAACCUCUAUCUUCGCACAACACGUCAACCUUUUUCGGCUCAGAUUCCGAAUC .(((((..((((((((.((((((((((((.(((......))).)))).)))...(.....)..)))))....))))))))..)))))...... ( -26.70) >consensus CGAGUGAGAGCUGGAACUGGACGAUGAGGAUCCGCUAUGGGAACCUCCAUCUUCGCCCAACACUUCAACCUCUUCCGGCUCGAAUUCUGAAUC .((((..(((((((((...((.(((((((.(((......))).)))).))).))(.....)...........)))))))))..))))...... (-24.90 = -25.06 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:26 2006