Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,058,225 – 16,058,317 |
Length | 92 |
Max. P | 0.993989 |
Location | 16,058,225 – 16,058,317 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 90.91 |
Mean single sequence MFE | -19.75 |
Consensus MFE | -17.00 |
Energy contribution | -17.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.86 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876919 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16058225 92 + 27905053 AUAUAAUAAAAAUAAGGCAGCAAACAAAAGGCGAACGCGAGGUGCCUGUUAAGCACCCCAAGCAGGGCCAAAAUAAUAUA--UAUGUGG------------UGAAA ...............(((.((.........((....))(.(((((.......))))).)..))...)))...........--.......------------..... ( -17.00) >DroSec_CAF1 18093 92 + 1 AUAUAAUAAAAAUAAGGCAGCAAACAAAAGGCGAACGCGAGGUGCCUGUUAAGCACCCCAAGCAGGGCCAAAAUAAUAUA--UAUAUGG------------UGAAA ...............(((.((.........((....))(.(((((.......))))).)..))...)))...........--.......------------..... ( -17.00) >DroSim_CAF1 16637 94 + 1 AUAUAAUAAAAAUAAGGCAGCAAACAAAAGGCGAACGCGAGGUGCCUGUUAAGCACCCCAAGCAGGGCCAAAAUAAUAUAUAUAUAUGG------------UGAAA ...............(((.((.........((....))(.(((((.......))))).)..))...)))....................------------..... ( -17.00) >DroYak_CAF1 24744 104 + 1 AUAUAAUAAAAAUAAGGCGGCAAACAAAAGGCGAACGCGAGGUGCCUGUUAAGCACCCCAAGCAGGGCCAAAAAUAUAUA--UAUAUGGUGGCCUGAUGGGUGAAA ..............(((((.(...(....)((....))..).)))))......(((((......((((((...((((...--.))))..))))))...)))))... ( -28.00) >consensus AUAUAAUAAAAAUAAGGCAGCAAACAAAAGGCGAACGCGAGGUGCCUGUUAAGCACCCCAAGCAGGGCCAAAAUAAUAUA__UAUAUGG____________UGAAA ...............(((.((.........((....))(.(((((.......))))).)..))...)))..................................... (-17.00 = -17.00 + 0.00)
Location | 16,058,225 – 16,058,317 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 90.91 |
Mean single sequence MFE | -21.65 |
Consensus MFE | -20.10 |
Energy contribution | -20.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.58 |
Structure conservation index | 0.93 |
SVM decision value | 2.44 |
SVM RNA-class probability | 0.993989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16058225 92 - 27905053 UUUCA------------CCACAUA--UAUAUUAUUUUGGCCCUGCUUGGGGUGCUUAACAGGCACCUCGCGUUCGCCUUUUGUUUGCUGCCUUAUUUUUAUUAUAU .....------------....(((--((.........(((...((..((((((((.....))))))))((....)).........)).)))..........))))) ( -20.61) >DroSec_CAF1 18093 92 - 1 UUUCA------------CCAUAUA--UAUAUUAUUUUGGCCCUGCUUGGGGUGCUUAACAGGCACCUCGCGUUCGCCUUUUGUUUGCUGCCUUAUUUUUAUUAUAU .....------------..(((((--.(((.......(((...((..((((((((.....))))))))((....)).........)).))).......)))))))) ( -20.94) >DroSim_CAF1 16637 94 - 1 UUUCA------------CCAUAUAUAUAUAUUAUUUUGGCCCUGCUUGGGGUGCUUAACAGGCACCUCGCGUUCGCCUUUUGUUUGCUGCCUUAUUUUUAUUAUAU .....------------....(((((.(((.......(((...((..((((((((.....))))))))((....)).........)).))).......)))))))) ( -20.84) >DroYak_CAF1 24744 104 - 1 UUUCACCCAUCAGGCCACCAUAUA--UAUAUAUUUUUGGCCCUGCUUGGGGUGCUUAACAGGCACCUCGCGUUCGCCUUUUGUUUGCCGCCUUAUUUUUAUUAUAU ............(((((..((((.--...))))...)))))..((..((((((((.....))))))))(((..((.....))..))).))................ ( -24.20) >consensus UUUCA____________CCAUAUA__UAUAUUAUUUUGGCCCUGCUUGGGGUGCUUAACAGGCACCUCGCGUUCGCCUUUUGUUUGCUGCCUUAUUUUUAUUAUAU .....................................(((...((.(((((((((.....))))))))).))..)))............................. (-20.10 = -20.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:25 2006