Locus 6128

Sequence ID 3R_DroMel_CAF1
Location 16,057,887 – 16,057,988
Length 101
Max. P 0.975951
window9990

overview

Window 0

Location 16,057,887 – 16,057,988
Length 101
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 82.41
Mean single sequence MFE -19.70
Consensus MFE -15.26
Energy contribution -15.74
Covariance contribution 0.48
Combinations/Pair 1.09
Mean z-score -2.43
Structure conservation index 0.77
SVM decision value 1.76
SVM RNA-class probability 0.975951
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16057887 101 - 27905053
AAAAAAA----------CAAAUAUGAAAUAGCCUCACUUUGAGUGCUUAACGCUGGCUUCAAAGAGCUCAAAAGCGUUGCCCAAUGCACA-AAUGCAAAACAAAAACAAAAA
.......----------............((((((.....))).)))((((((((((((....)))))....))))))).....((((..-..))))............... ( -19.30)
>DroSec_CAF1 17771 88 - 1
AA--AAA----------CAAAUAUGAAAUAGCCUCACUUUGAGUGCUUAACGCUGGCUUCAAAGAGCUCAAAAGCGUUGCCCAAUGCACA-AAUGCAAA-----------AA
..--...----------............((((((.....))).)))((((((((((((....)))))....))))))).....((((..-..))))..-----------.. ( -19.30)
>DroSim_CAF1 16308 88 - 1
AA--AAA----------CAAAUAUGAAAUAGCCUCACUUUGAGUGCUUAACGCUGGCUUCAAAGAGCUCAAAAGCGUUGCCCAAUGCACA-AAUGCAAA-----------AA
..--...----------............((((((.....))).)))((((((((((((....)))))....))))))).....((((..-..))))..-----------.. ( -19.30)
>DroYak_CAF1 24407 96 - 1
AA--AAA----------GAGAUAUGAAAUAGCCUCACUUUGAGUGCUUAACGCUGGCUUCAAAGAGCUCAAAAGCGUUGCCCAAUGCACA-AAUGCAAAA---AAUUCAAAA
..--...----------......((((..((((((.....))).)))((((((((((((....)))))....))))))).....((((..-..))))...---..))))... ( -20.90)
>DroAna_CAF1 1691 101 - 1
CAAAAAAUAAAGAAGCUCAGAUAUGGAAGAGCCUCGCUUUGAGUACUUAACGCUGGCUUCAAAGAGCUCAAAUCUGUUGCCCAUUGCACACAAUGUCUA-----------AA
..........(((.((.(((((......((((....(((((((..(........)..))))))).))))..)))))..)).(((((....)))))))).-----------.. ( -19.70)
>consensus
AA__AAA__________CAAAUAUGAAAUAGCCUCACUUUGAGUGCUUAACGCUGGCUUCAAAGAGCUCAAAAGCGUUGCCCAAUGCACA_AAUGCAAA___________AA
.............................((((((.....))).)))((((((((((((....)))))....))))))).....((((.....))))............... (-15.26 = -15.74 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:23 2006