| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,052,537 – 16,052,654 |
| Length | 117 |
| Max. P | 0.993177 |
| Location | 16,052,537 – 16,052,654 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.58 |
| Mean single sequence MFE | -32.10 |
| Consensus MFE | -24.52 |
| Energy contribution | -24.53 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.76 |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.993177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16052537 117 + 27905053 ACGUGAAGCCACCGCCACCGCACAUCUGCUCAAACACAGGUAAGUGUGGUUUGACUCGCGGCAAAAGGCAAUUGCCUUUUCUGAGAAUGAUACACAAUUAUAAAGGCAAAAAAAAAA ..(((....))).(((((((((((((((........)))))..))))))).....((.(((.(((((((....)))))))))).))..................))).......... ( -32.90) >DroSec_CAF1 10856 96 + 1 AGGUGAAGCCACCGCCACCGCACAUCUGCUCAAACACAGGUAGGUGUGU-UUAUCUCGCGGCAAAAGGCAAUUGCUUUUUCCGAAAAUGAUACUCA--------------------A .((((....))))......(((((((((((........)))))))))))-.((((...(((.(((((((....)))))))))).....))))....--------------------. ( -32.20) >DroSim_CAF1 11027 96 + 1 AUGUGAAGCCACCGCCACCGCACAUCUGCUCAAACACAGGUAGGUGUGG-UUGUCUCGCGGCAAAAGGCAAUUGCUUUUUCCGAAAAUGAUACUCA--------------------A ..((((..(.(((((....))(((((((((........)))))))))))-).)..))))((.(((((((....)))))))))..............--------------------. ( -30.30) >DroYak_CAF1 19012 115 + 1 AGGUGAAGCCGCCGCCACCGCACAUCUGCUCAAACACAGGUAGGUGUGG-UUGACUUGGGGCAAAAGUCAAUUGCCUUUUCCCGCGAUGAUACUCGAUUGAAAA-GCUAACUAAGAA .((((....))))((.....((((((((((........))))))))))(-(((((((.......)))))))).))((((((...(((......)))...)))))-)........... ( -33.00) >consensus AGGUGAAGCCACCGCCACCGCACAUCUGCUCAAACACAGGUAGGUGUGG_UUGACUCGCGGCAAAAGGCAAUUGCCUUUUCCGAAAAUGAUACUCA____________________A .((((....)))).......((((((((((........))))))))))..........(((.(((((((....)))))))))).................................. (-24.52 = -24.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:18 2006