Locus 6124

Sequence ID 3R_DroMel_CAF1
Location 16,049,418 – 16,049,517
Length 99
Max. P 0.636190
window9984

overview

Window 4

Location 16,049,418 – 16,049,517
Length 99
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 91.26
Mean single sequence MFE -19.10
Consensus MFE -14.30
Energy contribution -14.42
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -1.86
Structure conservation index 0.75
SVM decision value 0.21
SVM RNA-class probability 0.636190
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16049418 99 + 27905053
CCAGAAUAUAAAAACAAA---AAA---AAAAACAGGCAAACCGCAUUGUUCGGAGUACACAAAGUCAACGCUGCGCUACUUUGCCUGACCUGAAUUCCAGCGAAA
..................---...---.....((((((((.((((.(((...((.(......).)).))).))))....)))))))).((((.....))).)... ( -19.00)
>DroSec_CAF1 7740 105 + 1
CCAGAACAUAAAAACAAACAAAAAAAAAAAAACAGGCAAACCACAUUGUUCGGAGUGCACAAAGUCAACGCUGCGCUACUUUGCCUGACCUGGAUUCCAGCGAAA
................................((((((((((.........))((((((....(....)..))))))..)))))))).(((((...)))).)... ( -20.60)
>DroSim_CAF1 7919 102 + 1
CCAGAACAUAAAAACAAACAAAAA---AAAAACAGGCAAACCACAUUGUUCGGAGUACACAAAGUCAACGCUGCGCUACUUUGCCUGACCUGGAUUCCAGCGAAA
........................---.....((((((((.......((.(((.((((.....))..)).))).))...)))))))).(((((...)))).)... ( -16.30)
>DroYak_CAF1 15279 95 + 1
CCAGAACAUAAAAACAAA---------AAAAACAGGCAAGCCACAUUGUUCGGCAUACACAAAGUCAACGCUGCGCUACU-UGCCUGACCUGGAUUCCAGCGAAA
..................---------.....((((((((.(.((.((((.(((.........))))))).)).)...))-)))))).(((((...)))).)... ( -20.50)
>consensus
CCAGAACAUAAAAACAAA___AAA___AAAAACAGGCAAACCACAUUGUUCGGAGUACACAAAGUCAACGCUGCGCUACUUUGCCUGACCUGGAUUCCAGCGAAA
................................((((((((.......((.(((.((((.....))..)).))).))...)))))))).((((.....))).)... (-14.30 = -14.42 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:17 2006