Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,047,001 – 16,047,120 |
Length | 119 |
Max. P | 0.878350 |
Location | 16,047,001 – 16,047,094 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.35 |
Mean single sequence MFE | -17.91 |
Consensus MFE | -13.69 |
Energy contribution | -13.47 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.11 |
Mean z-score | -1.20 |
Structure conservation index | 0.76 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542858 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16047001 93 - 27905053 ACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAAGCCAAA--CCUUAG-------------------------UAUCCCGGG .((..(((((.............(((((((((..............)))))))))...............(((.....--.)))))-------------------------)))...)). ( -16.44) >DroPse_CAF1 4309 112 - 1 ACUUAAUACUUGUAGAGAUUACAGUUGAGUGCAUUUCCA-AAGUCAGCACUCGGCACAAUAUAAAUUCAAAAGCCAAGAACCCCCAUAUUCCAUC-------CAUGUGCCAUCUCCCAUG ..............(((((.......((((((.......-......))))))((((((.....................................-------..)))))))))))..... ( -20.35) >DroSec_CAF1 4498 93 - 1 ACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAAGCCAAA--CCUUAG-------------------------UAUCCCGGG .((..(((((.............(((((((((..............)))))))))...............(((.....--.)))))-------------------------)))...)). ( -16.44) >DroSim_CAF1 4572 93 - 1 ACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAAGCCAAA--CCUUAG-------------------------UAUCCCGGG .((..(((((.............(((((((((..............)))))))))...............(((.....--.)))))-------------------------)))...)). ( -16.44) >DroYak_CAF1 11978 93 - 1 ACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAAGCCAAG--CCUUAG-------------------------UAUCCCGGG ..((((.((((...(......).(((((((((..............)))))))))....................)))--).))))-------------------------......... ( -17.64) >DroPer_CAF1 4206 119 - 1 ACUUAAUACUUGUAGAGAUUACAGUUGAGUGCAUUUCCA-AAGUCAGCACUCGGCACAAUAUAAAUUCAAAAGCCAAGAACCCCCAUAUUCCAUCCCUAUUCCAUGUGCCAUCUCCCAUG ..............(((((.......((((((.......-......))))))((((((..............................................)))))))))))..... ( -20.17) >consensus ACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAAGCCAAA__CCUUAG_________________________UAUCCCGGG .......................(((((((((..............)))))))))................................................................. (-13.69 = -13.47 + -0.22)
Location | 16,047,016 – 16,047,120 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.99 |
Mean single sequence MFE | -22.28 |
Consensus MFE | -19.62 |
Energy contribution | -20.04 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.14 |
Mean z-score | -1.91 |
Structure conservation index | 0.88 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16047016 104 - 27905053 -----------GU--GCGC-UUUGAAAAAAGGUUACACACACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAAGCCAAA-- -----------.(--(.((-((((((...((((.......))))...................(((((((((..............)))))))))..........))).)))))))..-- ( -22.94) >DroPse_CAF1 4342 118 - 1 -AAAUGAAUGGAUUGGCGCCCCAGAAAAAAGGUUACACACACUUAAUACUUGUAGAGAUUACAGUUGAGUGCAUUUCCA-AAGUCAGCACUCGGCACAAUAUAAAUUCAAAAGCCAAGAA -...........(((((.................................(((((...)))))(((((((((.......-......))))))))).................)))))... ( -21.32) >DroSec_CAF1 4513 104 - 1 -----------GU--GCGC-UUUGAAAAAAGGUUACACACACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAAGCCAAA-- -----------.(--(.((-((((((...((((.......))))...................(((((((((..............)))))))))..........))).)))))))..-- ( -22.94) >DroSim_CAF1 4587 104 - 1 -----------GU--GCGC-UUUGAAAAAAGGUUACACACACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAAGCCAAA-- -----------.(--(.((-((((((...((((.......))))...................(((((((((..............)))))))))..........))).)))))))..-- ( -22.94) >DroYak_CAF1 11993 104 - 1 -----------GU--UUGC-UUUGGAAAAAGGUUACACACACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAAGCCAAG-- -----------..--..((-(((.(((..((((.......))))...................(((((((((..............)))))))))..........))).)))))....-- ( -22.24) >DroPer_CAF1 4246 119 - 1 AAAAUGAAUGGAUUGGCGCCCCAGAAAAAAGGUUACACACACUUAAUACUUGUAGAGAUUACAGUUGAGUGCAUUUCCA-AAGUCAGCACUCGGCACAAUAUAAAUUCAAAAGCCAAGAA ............(((((.................................(((((...)))))(((((((((.......-......))))))))).................)))))... ( -21.32) >consensus ___________GU__GCGC_UUUGAAAAAAGGUUACACACACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAAGCCAAA__ .................((.((((((...((((.......))))...................(((((((((..............)))))))))..........)))))).))...... (-19.62 = -20.04 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:14 2006