Locus 6119

Sequence ID 3R_DroMel_CAF1
Location 16,044,191 – 16,044,286
Length 95
Max. P 0.906701
window9973

overview

Window 3

Location 16,044,191 – 16,044,286
Length 95
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.43
Mean single sequence MFE -26.38
Consensus MFE -12.36
Energy contribution -13.60
Covariance contribution 1.24
Combinations/Pair 1.23
Mean z-score -2.07
Structure conservation index 0.47
SVM decision value 1.05
SVM RNA-class probability 0.906701
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16044191 95 + 27905053
CACUUUACGCACAUAUGAGCAUUGAAGGACGUUGCGAAACG--------------UAUCAAAAGAUAUGUCUGCGCUCAUGUAGAGCGUU--CGCCUCCUUCACUCU---------GCAU
........(((.....(((...(((((((....((((.(((--------------((((....)))))))..((((((.....)))))))--))).)))))))))))---------)).. ( -31.20)
>DroPse_CAF1 1941 94 + 1
CACUUUACGCACACGUUAACAUUGAAGGACGAUGC-----A--------------UAUCAAAAGAUAUGUCUGCUG-------GUACCAUUACCUCUCUUUCAUUUCAUUUUUCUUCCAU
......................(((((((.((.((-----(--------------((((....))))))).....(-------(((....)))))))))))))................. ( -15.90)
>DroSec_CAF1 1703 95 + 1
CACUUUACGCACAUGUGAGCAUUGAAGGACGAUGCGAAACG--------------UAUCAAAAGAUAUGUCUGCGCUCAUGUAGAGCGUU--CGCCUCCUUCACUCU---------GAAU
................(((...(((((((....((((.(((--------------((((....)))))))..((((((.....)))))))--))).)))))))))).---------.... ( -29.40)
>DroSim_CAF1 1692 95 + 1
CACUUUACGCACAUGUGAGCAUUGAAGGACGAUGCGAAACG--------------UAUCAAAAGAUAUGUCUGCGCUCAUGUAGAGCGUU--CGCCUCCUUCACUCU---------GAAU
................(((...(((((((....((((.(((--------------((((....)))))))..((((((.....)))))))--))).)))))))))).---------.... ( -29.40)
>DroYak_CAF1 8919 109 + 1
CACUUUACGCACAUGUGAGCUUUGAAGGACGAUGCGAUACGAUAUACGAGUAUGAUAAUAAAGGAUAUGUCUGCGCGCAUGUAGAACGUU--CGCCUUCUUCACUCU---------GCAU
........(((...(((((....(((((.(((.(((.....((((.((.(((.((((..........))))))).)).))))....))))--))))))))))))..)---------)).. ( -26.00)
>consensus
CACUUUACGCACAUGUGAGCAUUGAAGGACGAUGCGAAACG______________UAUCAAAAGAUAUGUCUGCGCUCAUGUAGAGCGUU__CGCCUCCUUCACUCU_________GCAU
................(((...(((((((....(((..........................(((....)))((((((.....))))))...))).)))))))))).............. (-12.36 = -13.60 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:07 2006