| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,042,966 – 16,043,160 |
| Length | 194 |
| Max. P | 0.659138 |
| Location | 16,042,966 – 16,043,086 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.26 |
| Mean single sequence MFE | -20.50 |
| Consensus MFE | -15.54 |
| Energy contribution | -16.10 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.614022 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16042966 120 - 27905053 GUAAAGUCGUUCAAAGGCAUUAAACUUUUUAAUAGUUUUCCUCUGCCGCACGAAAAAGCAUGCAAACAAACAAACGAACAACCAUUUCGUUAGAAGCUUACAAAAAGAUUUCUGUUUGAA ((....((((.....((((..(((((.......))))).....))))..))))....)).......(((((.((((((.......))))))((((((((.....))).)))))))))).. ( -22.10) >DroSec_CAF1 493 110 - 1 GUAAAGUCGUUCAAAGGCAUUAAUCUUUUAAAUAGUUUUCCUCUGCCACA----------GGCAAACAAUCAAACGAACAACCAUUUCGUUAGAAGCUUACAAAAAGAUUUCUGUUUGAA .........(((((..(((..((((((((....((((((....((((...----------))))........((((((.......)))))).))))))....))))))))..)))))))) ( -21.20) >DroSim_CAF1 478 110 - 1 GUAAAGUCGUUCAAAGGCAUUAAACUUUUAAAUAGUUUUCCUCUGCCACA----------GGCAAACAAACAAACGAACAACCAUUUCGUUAGAAGCUUACAAAAAGAUUUCUGUUUGAA .....(((.......((((..(((((.......))))).....))))...----------)))...(((((.((((((.......))))))((((((((.....))).)))))))))).. ( -19.30) >DroYak_CAF1 7748 104 - 1 GUAAAGUUUUUCAAAGGCAUUAAACUUUUAAAUAGUUUUCCUCUGCCG----------------AACAAACAAACGAAGAACUAUUUCGUUAGAAGCUUACAAAAAGAUUUUCGUUUGAA .....((((..((.(((....(((((.......))))).))).))..)----------------)))...((((((((((.((.(((.((.((...)).))))).)).)))))))))).. ( -19.40) >consensus GUAAAGUCGUUCAAAGGCAUUAAACUUUUAAAUAGUUUUCCUCUGCCACA__________GGCAAACAAACAAACGAACAACCAUUUCGUUAGAAGCUUACAAAAAGAUUUCUGUUUGAA ...............((((..(((((.......))))).....))))...................(((((.((((((.......))))))((((((((.....))).)))))))))).. (-15.54 = -16.10 + 0.56)
| Location | 16,043,046 – 16,043,160 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 95.18 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -21.55 |
| Energy contribution | -22.05 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.659138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16043046 114 + 27905053 GAAAACUAUUAAAAAGUUUAAUGCCUUUGAACGACUUUACUUGCAUUUUCCUUUUCAAUAAGGCGAUAUUUUUAAAUGGAAUUUCCGAUGCUUGUUAAUAUGCAAGUGGCUCAA ...............((((((.....))))))((..((((((((((...((((......)))).............(((.....)))............)))))))))).)).. ( -19.00) >DroSec_CAF1 563 114 + 1 GAAAACUAUUUAAAAGAUUAAUGCCUUUGAACGACUUUACUUGCAUUUUCCUUUUCAAUAAGGCGAUAUUUUUAAAUGGAAUUUCCGUUGCUUGUUAAUAUGCAAGUGGCUCAA ((((.(((((((((((..((.((((((((((......................))))..)))))).)))))))))))))..)))).((..(((((......)))))..)).... ( -24.65) >DroSim_CAF1 548 114 + 1 GAAAACUAUUUAAAAGUUUAAUGCCUUUGAACGACUUUACUUGCAUUUUCCUUUUCAAUAAGGCGAUAUUUUUAAAUGGAAUUUCCGUUGCUUGUUAAUAUGCAAGUGGCUCAA ((((.((((((((((((....((((((((((......................))))..))))))..))))))))))))..)))).((..(((((......)))))..)).... ( -26.55) >DroYak_CAF1 7812 114 + 1 GAAAACUAUUUAAAAGUUUAAUGCCUUUGAAAAACUUUACUUGCAUUUUCCUUUUCAAUAAGGUGAUGUUCUUAAAUGGAAUUUGCGUUGCUUGUUAAUAUGCAAGUAGCUCGA .....((((((((((((((............)))))))....(((((..((((......)))).)))))...)))))))...(((.(((((((((......))))))))).))) ( -25.50) >consensus GAAAACUAUUUAAAAGUUUAAUGCCUUUGAACGACUUUACUUGCAUUUUCCUUUUCAAUAAGGCGAUAUUUUUAAAUGGAAUUUCCGUUGCUUGUUAAUAUGCAAGUGGCUCAA .....((((((((((((....((((((((((......................))))..))))))..)))))))))))).......(((((((((......))))))))).... (-21.55 = -22.05 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:06 2006