| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,040,686 – 16,040,778 |
| Length | 92 |
| Max. P | 0.827447 |
| Location | 16,040,686 – 16,040,778 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 86.10 |
| Mean single sequence MFE | -26.07 |
| Consensus MFE | -18.04 |
| Energy contribution | -18.35 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16040686 92 - 27905053 UUGCUGUGAUUUGGGUUAAGUGCUGCUUGUGCGCUUUUAAGUAGGUACAUGUGUGUG--UCUGUAUACGUGUAUGUACAC---UCCGUACGUAAGUG ((((.(((....((((.((((((.......))))))....(((.(((((((((((..--....))))))))))).)))))---))..)))))))... ( -27.40) >DroSec_CAF1 57184 90 - 1 UUGCUGUGAUUUGGGUUAAGUGCUGCUUGUGCGCUUUUAAGUAGGUACAUGU--GUG--UCUGUAUACGUGUAUGUACAU---UCCGUACGUUAGUG ..((((.....((((..((((((.......))))))....(((.((((((((--(((--....))))))))))).)))..---)))).....)))). ( -27.60) >DroYak_CAF1 52065 90 - 1 UUGCUGUGAUUUGGGUUAAGUGCUGCUUGUGCGCUUUUAAGUAGGUACAUGU--GUG--UCUGUAUACGUGUGUGUACGC---UCUGUACAUCAGUG ..((((((....((((.((((((.......))))))....(((..(((((((--(((--....))))))))))..)))))---))....)).)))). ( -26.80) >DroAna_CAF1 37290 90 - 1 UUGCUGUGAUUUGGGUUAAGUGCUGCUUGUGCGCUUUUAAGUAGGUACAUGU--GCGACUCUGUGUACAA--AUAUACAUCCAUCCAUAC---AGAU ...(((((...(((((...((((((((((........)))))).)))).(((--(((......)))))).--......)))))....)))---)).. ( -22.50) >consensus UUGCUGUGAUUUGGGUUAAGUGCUGCUUGUGCGCUUUUAAGUAGGUACAUGU__GUG__UCUGUAUACGUGUAUGUACAC___UCCGUACGU_AGUG ..((((.....((((..((((((.......))))))....(((.((((((((..(((......))))))))))).))).....)))).....)))). (-18.04 = -18.35 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:04 2006