Locus 6115

Sequence ID 3R_DroMel_CAF1
Location 16,034,102 – 16,034,212
Length 110
Max. P 0.666077
window9967

overview

Window 7

Location 16,034,102 – 16,034,212
Length 110
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 82.60
Mean single sequence MFE -33.73
Consensus MFE -23.46
Energy contribution -24.55
Covariance contribution 1.09
Combinations/Pair 1.31
Mean z-score -1.89
Structure conservation index 0.70
SVM decision value 0.28
SVM RNA-class probability 0.666077
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16034102 110 + 27905053
--------AGUGUUCUUCAUCUUUAAAGGUUCGAUGUCAAACUCUGUGGCCAGUUCUUCCAGAACUGACAGAGUACAGGAGGACAUUGUGAGUCCUCCCUGUUCGUCGACCAUCUUCA
--------...................(((.(((((....(((((((...((((((.....)))))))))))))((((((((((.......))))).))))).))))))))....... ( -39.10)
>DroSec_CAF1 50564 110 + 1
--------AUUGGCCUUCAUCUUCAAAGGUUCGAUGUCAAACUCUGUGGCCAGUUCGUCCAGAACUGACAGAGUACUGGGAGACAUUGUGAGUCCUCCCUGUUCGUCGACUAUCUUCA
--------....(((((........)))))((((((.((.(((((((...((((((.....)))))))))))))...(((((((.......)).)))))))..))))))......... ( -35.20)
>DroSim_CAF1 33985 118 + 1
AUUGGUUUAUUGGCCUUCAUCUUCAAAGGUUCGAUGUCAAACUCUGUGGCCAGUUCGUCCAGAACUGACAGAGUACAGGGAGACAUUGUGAGUCCUCCCUGUUCGUCGACCAUCUUCA
...((((....))))............(((.(((((....(((((((...((((((.....)))))))))))))((((((((((.......)).)))))))).))))))))....... ( -42.30)
>DroEre_CAF1 34860 110 + 1
--------AUUGACCGUCAUCUGCAAAGGUUCGAUGCCAAACUCUGUGGCCAGUUCUUCCAGAACAGACAGAGUGCAGGGAGACAUUGUGAGUCCACCCUGUUCGUCGACCAUCUUCA
--------...................(((.(((((....(((((((.....((((.....))))..)))))))((((((.(((.......)))..)))))).))))))))....... ( -31.50)
>DroYak_CAF1 41948 110 + 1
--------GUUGGCCGUCAUCUUCAAAGGUUCGAUGUCCAACUGUGUGGCCAGUUCUUCCAGAACAGACAGAGUACAGGGAGUCAUUGUGAGUCCUCCCUGUUCGUCGACCAUCUUCA
--------(((((.((((((((....))))..)))).)))))...((((.(.((((.....)))).(((.((..((((((((((.....))...)))))))))))))).))))..... ( -34.10)
>DroAna_CAF1 30973 110 + 1
--------AAUUCCCUUCAUCUUCAAGGGUGCAAUCUGAAACUUUUCGGCCAACUCUCCAAGGACACUCAAGGUGCAAGGCGUCAUUGUAAAGCCGCCCUGGUCAUCUACCAUCUUCA
--------............(((..(((((.....(((((....)))))...)))))..)))(((.....(((.((..(((...........)))))))).))).............. ( -20.20)
>consensus
________AUUGGCCUUCAUCUUCAAAGGUUCGAUGUCAAACUCUGUGGCCAGUUCUUCCAGAACAGACAGAGUACAGGGAGACAUUGUGAGUCCUCCCUGUUCGUCGACCAUCUUCA
...........................(((.(((((....(((((((.....((((.....))))..)))))))((((((((((.......)).)))))))).))))))))....... (-23.46 = -24.55 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:00 2006