Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,033,835 – 16,033,933 |
Length | 98 |
Max. P | 0.544640 |
Location | 16,033,835 – 16,033,933 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 80.48 |
Mean single sequence MFE | -16.33 |
Consensus MFE | -14.15 |
Energy contribution | -14.27 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -0.89 |
Structure conservation index | 0.87 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16033835 98 - 27905053 ----AUUAGCACAUUAAAUUACUUUUCAUUUUUAACUUGUACUGUUCACAAUCUUUUUGGUCUAAUGUGCACAUAUUCCGAUUUUUUGAAUAGCACUAAAGC ----....((((((((.((((............(((.......)))...........)))).))))))))...(((((.........))))).......... ( -10.80) >DroSec_CAF1 50307 86 - 1 ------UAGCACAUCG----------CAUUUUUAAUUGGUACUGUUCACAAUCCUUUUGGUAUGGUGUGCACAUAUUCCGAUUUUUUGAAUAGCACCAAUGC ------..((.....)----------).......((((((.(((((((.((.....((((....(((....)))...))))..)).))))))).)))))).. ( -19.80) >DroSim_CAF1 33709 92 - 1 AGCGAAUAGCACAUUG----------AAUUUUUAACUGGUACUGUUCACAAUCCUUUUGGUCUGGUGUGCACAUAUUCCGAUUUUUUGAAUAGAACCAAUGC .((.....))......----------..........((((.(((((((.((.....((((....(((....)))...))))..)).))))))).)))).... ( -18.40) >consensus ____A_UAGCACAUUG__________CAUUUUUAACUGGUACUGUUCACAAUCCUUUUGGUCUGGUGUGCACAUAUUCCGAUUUUUUGAAUAGCACCAAUGC ....................................((((.(((((((.((.....((((....(((....)))...))))..)).))))))).)))).... (-14.15 = -14.27 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:59 2006