Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,027,383 – 16,027,488 |
Length | 105 |
Max. P | 0.895524 |
Location | 16,027,383 – 16,027,488 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 89.33 |
Mean single sequence MFE | -20.62 |
Consensus MFE | -14.96 |
Energy contribution | -17.20 |
Covariance contribution | 2.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.51 |
Structure conservation index | 0.73 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16027383 105 - 27905053 AGAAAUCUCGGUUACAUUCGAAUAAAAUAAAGCCGAACAAACAUUUCGUUCAUUUCAAUAAAGAUGAACAAAAGGGAUAAUCUAGCUCCAUUGGAUAGUCUUGAA .(((((.((((((..(((.......)))..))))))......)))))((((((((......))))))))....(((((.((((((.....)))))).)))))... ( -20.10) >DroSec_CAF1 43973 104 - 1 -AAAAUCUCGGUUACAUUCGAAUAAAAUAAAGCCGAAUAAACAUUUCGUUCAUUUCAAUAAAGAUGAACAAAAGGGAUUAUCUACUUCCAUUGGAUAGUCUUGAA -......((((((..(((.......)))..))))))........(((((((((((......))))))))....(((((((((((.......)))))))))))))) ( -22.30) >DroSim_CAF1 27303 104 - 1 -AAAAUCUCGGUUACAUUCGAAUAAAAUAAAGCCGAAUAAACAUUUCGUUCAUUUCAAUAAAGAUGAACAAACGGGAUUAUCUACUUCCAUUGGAUAGUCUUGAA -......((((((..(((.......)))..))))))...........((((((((......))))))))...((((((((((((.......)))))))))))).. ( -24.70) >DroEre_CAF1 28216 100 - 1 -AAAAUCUCGGCUACAUUCGAAUAAAAUAAAGCCGAAUAAACAUUUCGUUCAUUUCUAUAAAUAUGAACAAAAGGGAUUAC----GCCCAUUGAAUAGUCUUCAA -......((((((..(((.......)))..))))))...........((((((..........))))))....(((.....----.))).(((((.....))))) ( -17.70) >DroYak_CAF1 35533 99 - 1 -AAAAUCUCCUUUACAUUCGAAUAAAAUAAAGCCGAAUAAUGGUUUCGUUCAUUUCUAUAAAUAUGAACAAAAGGGAUUAU----U-CCAUUGGAUAGUCUUAAA -.......(((((................((((((.....)))))).((((((..........)))))).)))))((((((----(-(....))))))))..... ( -18.30) >consensus _AAAAUCUCGGUUACAUUCGAAUAAAAUAAAGCCGAAUAAACAUUUCGUUCAUUUCAAUAAAGAUGAACAAAAGGGAUUAUCUA_UUCCAUUGGAUAGUCUUGAA .......((((((..(((.......)))..))))))...........((((((((......))))))))....(((((((((((.......)))))))))))... (-14.96 = -17.20 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:58 2006