Locus 6112

Sequence ID 3R_DroMel_CAF1
Location 16,025,639 – 16,025,734
Length 95
Max. P 0.573979
window9964

overview

Window 4

Location 16,025,639 – 16,025,734
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 91.36
Mean single sequence MFE -19.73
Consensus MFE -15.80
Energy contribution -15.63
Covariance contribution -0.16
Combinations/Pair 1.15
Mean z-score -2.23
Structure conservation index 0.80
SVM decision value 0.08
SVM RNA-class probability 0.573979
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16025639 95 + 27905053
GCUUUUUUAUUUUGGCAUCCUUGUCGCCCUUUUCGCCAUAGUCUUAUAUUUUAAAAUUAUGUCAAUUUCUUUUGAGCAUAAAGAGCGCGGAUUUU
(((..........)))((((..(.(((.((((..((((((((.(((.....))).))))))((((......))))))..)))).))))))))... ( -17.70)
>DroSec_CAF1 42223 95 + 1
GCUUUUUUAUUUUGGCAUCCUUGUCGCCCUUUUCGCCGUAGUCUUAUAUUUUAAAAUUAUGUCAAUUUCUUUUGAGCAUAAAGAGCGCGGAUUUU
(((..........)))((((..(.(((.((((..((((((((.(((.....))).))))))((((......))))))..)))).))))))))... ( -17.30)
>DroSim_CAF1 25606 95 + 1
GCUUUUUUAUUUUGGCAUCCUUGUCGCCCUUUUCGCCGUAGUCUUAUAUUUUAAAAUUAUGUCAAUUUCUUUUGAGCAUAAAGAGCGCGGAUUUU
(((..........)))((((..(.(((.((((..((((((((.(((.....))).))))))((((......))))))..)))).))))))))... ( -17.30)
>DroEre_CAF1 26484 94 + 1
GCUUUU-UAUUUCGGCAUCUUUGCCGCCCUUUUCGUCGUAGUCUUAUAUUUUAAAAUUAUGUCAAUUUCUUUUGAGCAUAAAGAGCGCGGAUUUU
((((((-((((((((((....)))).........(.((((((.(((.....))).)))))).)..........))).)))))))))......... ( -22.00)
>DroYak_CAF1 33802 94 + 1
GCUUUU-AUUUUUGGCAUCUUUGCCGCCCUUUUUUCCGUGGUCUUAUAUUUUAAAAUUAUGUCAAUUUCUUUUGAGCAUAAAGAGCGCGGAUUUU
......-......((((....)))).........((((((.((((............((((((((......)))).)))))))).)))))).... ( -22.60)
>DroAna_CAF1 22751 91 + 1
GCUCGUU--UUUUGGCAUCUUUGCCGCCCUUUUUGUCGCGCUCUUAUAUUUUAAAAUUAUGUCAAUUUCUUUUGAGCAUAAA--GCGCGAAUAUU
.......--....((((....))))..........(((((((.(((.....)))..(((((((((......)))).))))))--))))))..... ( -21.50)
>consensus
GCUUUUUUAUUUUGGCAUCCUUGCCGCCCUUUUCGCCGUAGUCUUAUAUUUUAAAAUUAUGUCAAUUUCUUUUGAGCAUAAAGAGCGCGGAUUUU
((...........((((....))))((.((((..((((((((.(((.....))).))))))((((......))))))..)))).))))....... (-15.80 = -15.63 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:57 2006