| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,019,297 – 16,019,414 |
| Length | 117 |
| Max. P | 0.729394 |
| Location | 16,019,297 – 16,019,414 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.89 |
| Mean single sequence MFE | -27.97 |
| Consensus MFE | -17.81 |
| Energy contribution | -19.60 |
| Covariance contribution | 1.79 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.729394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16019297 117 - 27905053 AACUGCUGAGUUCUGAAAAGAUAUCUUGGCCUCAGGAUGUAUUUCGUUGUGGUUUUCUCCACACUAAGAAAAUCGAAAUUUCAAUUGAAACAGUUUGACUGUGGCAAUGUGUAUAUA ....((..((.(((....)))...))..))......((((((..((((((((((((((........))))))))...............((((.....)))).)))))).)))))). ( -28.30) >DroEre_CAF1 19474 101 - 1 AACUGCUGAGUUCUGAUAGGAUAUCUUUGCCUCG-GGUGUAUUUCGUUGUGGGUUUCUCUACACUAAGAGAAUAGCAA---------------UUUGACUGUGGGUGCUUGCAAAAA ...(((.((((.((.((((.((((((.......)-))))).....(((((....((((((......))))))..))))---------------)....)))).)).))))))).... ( -23.90) >DroYak_CAF1 26447 102 - 1 AACUGCUGAGUUCUGAUAGGAUAUCUUAGCCUCGGGGUGUAUUUUGUUGUGGUUUUCUCCACACUAAGAAAACCGCAA---------------UUUGACUAUAGGAUUUUGCAAACC ...(((.((((((((.(((.(((((((......))))))).((..(((((((((((((........))))))))))))---------------)..))))))))))))).))).... ( -31.70) >consensus AACUGCUGAGUUCUGAUAGGAUAUCUUAGCCUCGGGGUGUAUUUCGUUGUGGUUUUCUCCACACUAAGAAAAUCGCAA_______________UUUGACUGUGGGAAUUUGCAAAAA ...(((.(((((((.((((.(((((((......)))))))......((((((((((((........))))))))))))....................)))).)))))))))).... (-17.81 = -19.60 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:56 2006