| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,018,779 – 16,018,871 |
| Length | 92 |
| Max. P | 0.594302 |
| Location | 16,018,779 – 16,018,871 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.02 |
| Mean single sequence MFE | -18.70 |
| Consensus MFE | -13.55 |
| Energy contribution | -14.13 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16018779 92 + 27905053 GAAAGGAUG----CAGUUUGAGUAAAAUAAAUUGAAUUUAGUGCUUAUGUC-----CUGACAUUCGCUUUUAAUUUCAUUUGGUCUUAAGCCAAG---------CCACCC---------- ....((...----..(((((((..((((((((((((...((((...((((.-----...)))).)))))))))))).))))...)))))))....---------))....---------- ( -18.10) >DroPse_CAF1 17562 105 + 1 GAAAGGAUACACACAGUUUGAGCAAAAUAAAUUGAAUUUAGUGCUUAUGUC-----CUGACAUUCGCUUUUAAUUUCAUUUGGUCUUAAGCCAAGCGAGAGUCACCCCCC---------- ...((((((.........((((((...(((((...))))).))))))))))-----))(((.((((((............((((.....)))))))))).))).......---------- ( -23.40) >DroGri_CAF1 98456 90 + 1 -------UU----CAGUUUGAACUAAAUAAAUUGAAUUUAGCGCUUAUGUCCUGUCCUGACAUUCGCUUUUAAUUUCAUUCGGACUCAAGCCAAG---------CAACCC---------- -------..----..((((((.(..(((((((((((...((((...(((((.......))))).)))))))))))).)))..)..))))))....---------......---------- ( -17.80) >DroWil_CAF1 28222 102 + 1 GAUACACUG----CAGUUUGAGGAAAAUAAAUUGAAUUUAGUGCUUAUGUC-----CUGACAUUCGCUUUUAAUUUCAUUUGGUCUUAAGGCCAG---------CCAGCCAGCCCAGUUC .....((((----....((((((....(((((.(((.((((.((..((((.-----...))))..))..)))).)))))))).))))))(((...---------...)))....)))).. ( -19.70) >DroMoj_CAF1 92445 86 + 1 -------UA----CAGUCUGAGCUAAAUAAAUUGAAUUUAGCGCUUAUGCCCUUUCCUGACAUUUGCUUUUAAUUUCAUUCAGUCUCAAGCCAAG---------CC-------------- -------..----.((.(((((((((((.......)))))))((..(((..(......).)))..))............)))).)).........---------..-------------- ( -14.10) >DroPer_CAF1 17487 105 + 1 GAAAGGAUACACACAGUUUGAGCAAAAUAAAUUGAAUUUAGUGCUUAUGUC-----CUGACAUUCGCUUUUAAUUUCAUUUGGUAUUAAGCCAAGAGAGAGUCACCCCCC---------- (..((((((.........((((((...(((((...))))).))))))))))-----))..)............((((.((((((.....)))))).))))..........---------- ( -19.10) >consensus GAAAGGAUA____CAGUUUGAGCAAAAUAAAUUGAAUUUAGUGCUUAUGUC_____CUGACAUUCGCUUUUAAUUUCAUUUGGUCUUAAGCCAAG_________CCACCC__________ ...............(((((((..((((((((((((...((((...(((((.......))))).)))))))))))).))))...)))))))............................. (-13.55 = -14.13 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:55 2006