| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,009,014 – 16,009,113 |
| Length | 99 |
| Max. P | 0.618147 |
| Location | 16,009,014 – 16,009,113 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 83.76 |
| Mean single sequence MFE | -31.75 |
| Consensus MFE | -23.47 |
| Energy contribution | -24.92 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16009014 99 + 27905053 UCAGCAGGGGACUUGGAAUGCCACGCAGACUUCUCGGGCAAUGACAGCUGUCAAAAUUGCCGGGAAUAAGUCGUUUGGUAUGCCGAAAAUUCCAACCAC .......((((.((((.((((((.((.((((((((((.(((((((....))))...)))))))))...)))))).)))))).))))...))))...... ( -33.50) >DroSec_CAF1 25439 99 + 1 UCAGCAGGGGACUUGGAAUGCCACGCAGACUUCUCGGGCAAUGACAGCUGUCAAAAUUGCCCGGAAUAAGUCGUUUGGUAUGCCGAAAAUUCCAACCAC .......((((.((((.((((((.((.(((((.((((((((((((....))))...))))))))...))))))).)))))).))))...))))...... ( -37.10) >DroEre_CAF1 8845 99 + 1 CCAGCAGGGGACUUGGAGUGCCACGCAGACUUCUCGGGCAAUGACAGCUGUCAAAAUUGCUGGGAAUAAGUCGUUUGGCAUGUCGAAAAUUCCUGCCAC ...(((((((..(((..((((((.((.((((((((((.(((((((....))))...)))))))))...)))))).))))))..)))...)))))))... ( -37.80) >DroWil_CAF1 17652 90 + 1 CCAAAA-GGGAA-----UUGCCACGCAGACGUCUAGCGCAAUGACAGCUGUCAAAAUUGCUUAGUGCAAGUCGCUUGGAAUGCCAAAAAUUUGUGU--- ......-.((.(-----((.(((.((.(((..((((.((((((((....))))...)))))))).....))))).)))))).))............--- ( -20.90) >DroYak_CAF1 9935 99 + 1 UCAGCAGGGGACUUGGAACGCCACGCAGACUUCUGGGGCAAUGACAGCUGUCAAAAUUGCUGGGAAUAAGUCGUUUGGCAUGCCGAAAAUUCCUACCAC ......(((((.((((...((((.((.(((((((.((.(((((((....))))...))))).)))...)))))).))))...))))...)))))..... ( -28.70) >DroAna_CAF1 6822 95 + 1 UCAGCAGGGGAGUUGCCACGCCACGCAGACGUCCCGGGCAAUGACAGCUGUCAAAAUUGCUUGGAAUAAGUCGUUUGGCUUGCCAAAAAUUCC----AC .......((((.(((.((.((((.((.(((...((((((((((((....))))...)))))))).....))))).)))).)).)))...))))----.. ( -32.50) >consensus UCAGCAGGGGACUUGGAAUGCCACGCAGACUUCUCGGGCAAUGACAGCUGUCAAAAUUGCUGGGAAUAAGUCGUUUGGCAUGCCGAAAAUUCCUACCAC .......((((.((((.((((((.((.(((((.((.(((((((((....))))...))))).))...))))))).)))))).))))...))))...... (-23.47 = -24.92 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:48 2006