| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,005,777 – 16,005,873 |
| Length | 96 |
| Max. P | 0.906154 |
| Location | 16,005,777 – 16,005,873 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.73 |
| Mean single sequence MFE | -24.40 |
| Consensus MFE | -15.47 |
| Energy contribution | -15.45 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16005777 96 - 27905053 CGGCUCGAGCGCUAAUUGCAAAUUUAUUGACUGCAAUAAAUGUCAGCA-CAGUUUCAGGCUGCAUUA-AAAUGAUGCAGUUA----C--A--GGAUUAC---CAGCCAU .((((.(.((((.....))..((((((((....))))))))....)).-.(((((..(((((((((.-....))))))))).----.--.--))))).)---.)))).. ( -26.20) >DroPse_CAF1 6199 98 - 1 CAAUUCGAGCGCUAAUUGCAAAUUUAUUGACUGCAAUAAAUGUCAGUA-GAGUUUCAAGUUGCAUUA-AAAUGAUGCAGUUC----C--CGGGGAUUAC---CCGACAU ......((((((.....))...(((((((((..........)))))))-)).........((((((.-....))))))))))----.--((((.....)---))).... ( -25.90) >DroGri_CAF1 81277 94 - 1 ------AUGUGCUAAUUGUAAAUUUAUUGACUGCAAUAAAUGUCAGCG-GAGCUUCAAGUUGCAUUA-AAAUGAUAACCUCA----GAAG-GGAAUUUGG--GCACAUG ------(((((((..(((...((((((((....))))))))..)))..-......((((((.(....-...(((.....)))----....-).)))))))--)))))). ( -19.90) >DroWil_CAF1 15780 104 - 1 CAGUU--AGCGCUAAUUGCAAAUUUAUUGACUGCAAUAAAUGUCAGCAAGAGCCUCAAGUUGCCUUUCACCAGAUGCAGUUUAGUUC--GAGGGAUUAU-AUUCACCAU .....--.(.((((((((((.((((((((....))))))))....(.(((.((........))))).)......))))).))))).)--..((((....-..)).)).. ( -18.60) >DroAna_CAF1 5031 97 - 1 CGUCUAGGGCGCUAAUUGCAAAUUUAUUGACUGCAAUAAAUGUCAGCA-GAGUUUCAAGCUGCAUUA-AAAUGAUGCAGUUA----C--A-GGGAUUAG---CAUCUAU ....((((..(((((((.(..((((((((....)))))))).......-........(((((((((.-....))))))))).----.--.-).))))))---).)))). ( -27.20) >DroPer_CAF1 6271 98 - 1 CAAUUCGAGCGCUAAUUGCAAAUUUAUUGACUGCAAUAAAUGUCAGUA-GAGUUUCAAGCUGCAUUA-AAAUGAUGCAGUUC----C--CGGGGAUUAC---CCGACAU ......((((((.....))...(((((((((..........)))))))-))))))..(((((((((.-....))))))))).----.--((((.....)---))).... ( -28.60) >consensus CAAUUCGAGCGCUAAUUGCAAAUUUAUUGACUGCAAUAAAUGUCAGCA_GAGUUUCAAGCUGCAUUA_AAAUGAUGCAGUUA____C__A_GGGAUUAC___CCGCCAU ......(((.(((...(((..((((((((....))))))))....)))..)))))).((((((((((....))))))))))............................ (-15.47 = -15.45 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:45 2006