Locus 6102

Sequence ID 3R_DroMel_CAF1
Location 16,000,666 – 16,000,760
Length 94
Max. P 0.930297
window9949

overview

Window 9

Location 16,000,666 – 16,000,760
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 73.76
Mean single sequence MFE -25.13
Consensus MFE -17.26
Energy contribution -17.47
Covariance contribution 0.21
Combinations/Pair 1.42
Mean z-score -1.48
Structure conservation index 0.69
SVM decision value 1.20
SVM RNA-class probability 0.930297
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16000666 94 + 27905053
AUUGCCGGCAGUUAGUCGAGCGGUUUAAGUGGUUUUCCCACCGCAUUCUAUUCCCCCAUCUCCUCAUCAAUUCCAUCCAGGUGGGGGGCCAUUU
...((((((.....)))).))(((....(((((......)))))........(((((((((.................)))))))))))).... ( -30.83)
>DroSec_CAF1 16895 94 + 1
AUUGCCGGCAGUUAGUCGAGCGGUUUAAGUGGUUUUCCCACCCCAUCCUAUUCCCCCACCACCAAAUCAAUUCCCUGCAGGUGGGGGGCCAUUU
...((((((.....)))).))(((....((((.....))))...........((((((((...................))))))))))).... ( -30.61)
>DroSim_CAF1 462 94 + 1
AUUGCCGGCAGUUAGUCGAGCGGUUUAAGUGGUUUUCCCACCCCAUCCUAUUCCUCCACCACCCCAUCAAUUCCCUCCAGGUGGGGGACCAUUU
...((((((.....)))).))((.....((((.....)))).....))...(((((((((...................)))))))))...... ( -27.61)
>DroEre_CAF1 461 91 + 1
AUUGUCGGCAGUUAGUCGAGUGGUUUAAGUGGUU-UCCCAUCCCAUUCCCGCCACCUCCCUCCCCAUCAAUUCCCUGCAGGUGGG--UCCAUUU
....(((((.....)))))(((((...(((((..-.......)))))...))))).......((((((...........))))))--....... ( -22.30)
>DroYak_CAF1 449 94 + 1
AUUGUCGGCAGUUAGUCGAGCGGUUUAAGUGGUUUUCCCAUCCCACUCCCGCAGCUCCCCUGCCCAUCAAUUUCCCCCAGGUGGGAGGCCAUUU
....(((((.....)))))((((....(((((..(....)..))))).))))......(((.((((((...........)))))))))...... ( -27.80)
>DroPer_CAF1 455 73 + 1
ACUGUCGCCAGUUUGUCAAGCGGUUUAAGUGGUUUCUCUCU----------------CUCUCCCUCUC---UCUGCGCAAAUG--GAGCCAUAC
..((.(.(((.(((((...((((....((.((.........----------------....))))...---.)))))))))))--).).))... ( -11.62)
>consensus
AUUGCCGGCAGUUAGUCGAGCGGUUUAAGUGGUUUUCCCACCCCAUUCUAUUCCCCCACCUCCCCAUCAAUUCCCUCCAGGUGGGGGGCCAUUU
(((((((((.....)))).)))))..(((((((.((((((((.....................................))))))))))))))) (-17.26 = -17.47 +   0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:42 2006