Locus 6101

Sequence ID 3R_DroMel_CAF1
Location 15,999,877 – 15,999,997
Length 120
Max. P 0.979094
window9948

overview

Window 8

Location 15,999,877 – 15,999,997
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 94.06
Mean single sequence MFE -45.70
Consensus MFE -41.54
Energy contribution -41.48
Covariance contribution -0.06
Combinations/Pair 1.08
Mean z-score -1.81
Structure conservation index 0.91
SVM decision value 1.83
SVM RNA-class probability 0.979094
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15999877 120 + 27905053
CCCCAGCGGGCAGUACGAGGACAUUCUCAAGGACGGCAUCUGGCUGUGCAAGCUGGCCAACAAACUGGCCCCCGGAUCGGUGAAGAAGAUCCAGGAGCGCGGCACCAACUUCCAACUGAU
...(((..((.(((..((((....))))..((.(((...)))(((((((.....(((((......)))))((.(((((.........))))).)).))))))).)).))).))..))).. ( -43.70)
>DroPse_CAF1 94622 120 + 1
GCCCAGCGGACAGUAUGAGGAUAUCCUCAAGGACGGCAUCUGGCUGUGCAAGCUGGCCAAUAAGCUGGCACCCGGAUCCGUGAAGAAGAUCCAGGAGCGUGGCACCAAUUUCCAGCUGAU
...((((((((....(((((....)))))...((((.((((((..((((.((((........)))).))))))))))))))......).))).((((..((....))..)))).)))).. ( -46.70)
>DroSim_CAF1 94176 120 + 1
CCCCAGCGGGCAGUAUGAGGACAUUCUCAAGGACGGCAUCUGGCUGUGCAAGCUGGCCAACAAACUGGCCCCCGGAUCGGUGAAGAAGAUCCAGGAGCGCGGCACCAACUUCCAGCUGAU
...((((.((.(((.(((((....))))).((.(((...)))(((((((.....(((((......)))))((.(((((.........))))).)).))))))).)).))).)).)))).. ( -46.70)
>DroYak_CAF1 125276 120 + 1
GCCCAGCGGGCAGUAUGAGGACAUUCUCAAGGACGGCAUCUGGCUGUGCAAGCUGGCCAACAAACUGGCCCCCGGAUCCGUGAAGAAGAUCCAAGAGCGCGGCACCAACUUCCAGCUGAU
...((((.((.(((.(((((....))))).((.(((...)))(((((((.....(((((......)))))...(((((.........)))))....))))))).)).))).)).)))).. ( -43.20)
>DroAna_CAF1 84289 120 + 1
GCCCAGCGGACAGUACGAGGAUAUCCUCAAGGACGGCAUCUGGCUGUGCAAGCUGGCCAACAAACUGGCCCCCGGAUCCGUCAAGAAGAUCCAGGAGCGUGGCACCAACUUCCAGCUGAU
...(((((((.(((..((((....))))..(((((((.....)))))((..((((((((......)))))((.(((((.........))))).)))))...)).)).)))))).)))).. ( -47.20)
>DroPer_CAF1 96653 120 + 1
GCCCAGCGGACAGUAUGAGGAUAUCCUCAAGGACGGCAUCUGGCUGUGCAAGCUGGCCAAUAAGCUGGCACCCGGAUCCGUGAAGAAGAUCCAGGAGCGUGGCACCAAUUUCCAGCUGAU
...((((((((....(((((....)))))...((((.((((((..((((.((((........)))).))))))))))))))......).))).((((..((....))..)))).)))).. ( -46.70)
>consensus
GCCCAGCGGACAGUAUGAGGACAUCCUCAAGGACGGCAUCUGGCUGUGCAAGCUGGCCAACAAACUGGCCCCCGGAUCCGUGAAGAAGAUCCAGGAGCGCGGCACCAACUUCCAGCUGAU
...(((((((.(((..((((....))))..(((((((.....)))))((..((((((((......)))))((.(((((.........))))).)))))...)).)).)))))).)))).. (-41.54 = -41.48 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:41 2006