Locus 610

Sequence ID 3R_DroMel_CAF1
Location 2,263,581 – 2,263,676
Length 95
Max. P 0.545512
window969

overview

Window 9

Location 2,263,581 – 2,263,676
Length 95
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 81.62
Mean single sequence MFE -25.28
Consensus MFE -21.10
Energy contribution -20.63
Covariance contribution -0.47
Combinations/Pair 1.17
Mean z-score -1.22
Structure conservation index 0.83
SVM decision value 0.02
SVM RNA-class probability 0.545512
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2263581 95 - 27905053
-A-----------ACAAUGUAA---AU-CAACUCACCAAUGCAACGAUACUGUCGACGGCCUUGUUGAAGCGAUCGACCAGACCGGUCAUAGUCUUAUAGCAGGCAGUGUC
-.-----------.........---..-.................((((((((((((((.((.(((((.....))))).)).)).)))...((......)).))))))))) ( -23.10)
>DroVir_CAF1 364 91 - 1
-------------GAUA----A---AUGGUACUUACCAAUGCAACAAUACUGUCGACAGCCUUGUUGAAGCGAUCGACAAGAUUUGUCAUAGUCUUAUAGCAGGCAGUGUC
-------------....----.---.((((....))))........(((((((((((((.((((((((.....))))))))..)))))...((......)).)))))))). ( -25.70)
>DroPse_CAF1 26508 92 - 1
-G-----------GCCACGGG-------AUACUUACCAAUGCAACAAUACUGUCGACGGCCUUGUUGAAGCGAUCGACAAGAUUUGUCAUAGUCUUAUAGCAGGCAGUGUC
-.-----------(((..((.-------.......))..(((......(((((.(((((.((((((((.....))))))))..))))))))))......))))))...... ( -26.10)
>DroGri_CAF1 205 107 - 1
GGAGUCAAUGGAGGAGAUUUUA---AU-UUACUUACCAAUGCAACAAUACUGUCGACAGCCUUGUUGAAGCGAUCGACAAGAUUUGUCAUAGUCUUAUAACAGGCAGUGUC
(..(.((.((((((((((....---))-)).))).))).)))..).(((((((((((((.((((((((.....))))))))..)))))...((......)).)))))))). ( -27.30)
>DroAna_CAF1 205 98 - 1
-A-----------AGGAUUGAAAGGAU-AAACUCACCAAUGCAACAAUACUGUCGACGGCCUUGUUGAAACGAUCGACCAGACCGGUCAUAGUCUUAUAGCAGGCAGUGUC
-.-----------.(.((((..((...-...))...)))).)....(((((((((((((.((.(((((.....))))).)).)).)))...((......)).)))))))). ( -23.40)
>DroPer_CAF1 26440 92 - 1
-G-----------GCCACGGG-------AUACUUACCAAUGCAACAAUACUGUCGACGGCCUUGUUGAAGCGAUCGACAAGAUUUGUCAUAGUCUUAUAGCAGGCAGUGUC
-.-----------(((..((.-------.......))..(((......(((((.(((((.((((((((.....))))))))..))))))))))......))))))...... ( -26.10)
>consensus
_G___________GCCAUGGAA___AU_AUACUUACCAAUGCAACAAUACUGUCGACGGCCUUGUUGAAGCGAUCGACAAGAUUUGUCAUAGUCUUAUAGCAGGCAGUGUC
..............................................(((((((((((((.((((((((.....)))))))).)).)))...((......)).)))))))). (-21.10 = -20.63 +  -0.47) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:21 2006